Merge pull request #2 from kbonney/opensg-docs

Add doc pages and workflow for gh pages

.gitignore

@@ -1,3 +1,179 @@
-docs/_build/*
-docs/_static/*
-__pycache__
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/latest/usage/project/#working-with-version-control
+.pdm.toml
+.pdm-python
+.pdm-build/
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+
+# Sphinx build output
+_build/
+apidoc/
+
+# Sphinx auto-generated files
+*.doctrees
+searchindex.js
+
+# Environment-specific files
+.env
+.venv
+venv/
+
+# Editor-specific files
+.idea/
+.vscode/

docs/_templates/autosummary/base.rst

@@ -0,0 +1,15 @@
+{% if objtype == 'property' %}
+:orphan:
+{% endif %}
+
+{{ objname | escape | underline}}
+
+.. rubric:: *module* :mod:`{{ module }}`
+
+.. currentmodule:: {{ module }}
+
+{% if objtype == 'property' %}
+property
+{% endif %}
+
+.. auto{{ objtype }}:: {{ fullname | replace(module + ".", module + "::") }}

docs/_templates/autosummary/class.rst

@@ -0,0 +1,37 @@
+{{ objname | escape | underline}}
+
+.. rubric:: *module* :mod:`{{ module }}`
+
+.. currentmodule:: {{ module }}
+
+.. autoclass:: {{ objname }}
+
+{% block methods %}
+{% if methods %}
+   .. HACK -- the point here is that we don't want this to appear in the output, but the autosummary should still generate the pages.
+      .. autosummary::
+
+      {% for item in all_methods %}
+         {%- if not item.startswith('_') or item in ['__call__'] %}
+         {{ name }}.{{ item }}
+         {%- endif -%}
+      {%- endfor %}
+{% endif %}
+{% endblock %}
+
+{% block attributes %}
+{% if attributes %}
+   .. HACK -- the point here is that we don't want this to appear in the output, but the autosummary should still generate the pages.
+      .. autosummary::
+
+      {% for item in all_attributes %}
+         {%- if not item.startswith('_') %}
+         {{ name }}.{{ item }}
+         {%- endif -%}
+      {%- endfor %}
+{% endif %}
+{% endblock %}
+
+   {% if methods or attributes %}
+   ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+   {% endif %}

docs/_templates/autosummary/exception.rst

@@ -0,0 +1,34 @@
+{{ objname | escape | underline}}
+
+.. rubric:: *module* :mod:`{{ module }}`
+
+.. currentmodule:: {{ module }}
+
+.. autoexception:: {{ objname }}
+   :no-inherited-members:
+
+{% block methods %}
+{% if methods %}
+   .. HACK -- the point here is that we don't want this to appear in the output, but the autosummary should still generate the pages.
+      .. autosummary::
+
+      {% for item in all_methods %}
+         {%- if not item.startswith('_') or item in ['__call__'] %}
+         {{ name }}.{{ item }}
+         {%- endif -%}
+      {%- endfor %}
+{% endif %}
+{% endblock %}
+
+{% block attributes %}
+{% if attributes %}
+   .. HACK -- the point here is that we don't want this to appear in the output, but the autosummary should still generate the pages.
+      .. autosummary::
+
+      {% for item in all_attributes %}
+         {%- if not item.startswith('_') %}
+         {{ name }}.{{ item }}
+         {%- endif -%}
+      {%- endfor %}
+{% endif %}
+{% endblock %}

docs/_templates/autosummary/module.rst

@@ -0,0 +1,73 @@
+{{ fullname | escape | underline}}
+
+.. automodule:: {{ fullname }}
+   :exclude-members: {% for item in attributes %}{{ item }}, {% endfor %}{% for item in functions %}{{ item }}, {% endfor %}{% for item in classes %}{{ item }}, {% endfor %}{% for item in exceptions %}{{ item }}, {% endfor %}
+
+   {% block attributes %}
+   {% if attributes %}
+   .. rubric:: {{ _('Module Attributes') }}
+
+   .. autosummary::
+      :toctree:
+      :template: autosummary/base.rst
+   {% for item in attributes %}
+      {{ item }}
+   {%- endfor %}
+   {% endif %}
+   {% endblock %}
+
+   {% block functions %}
+   {% if functions %}
+   .. rubric:: {{ _('Functions') }}
+
+   .. autosummary::
+      :nosignatures:
+      :toctree:
+      :template: autosummary/base.rst
+   {% for item in functions %}
+      {{ item }}
+   {%- endfor %}
+   {% endif %}
+   {% endblock %}
+
+   {% block classes %}
+   {% if classes %}
+   .. rubric:: {{ _('Classes') }}
+
+   .. autosummary::
+      :nosignatures:
+      :toctree:
+      :template: autosummary/class.rst
+   {% for item in classes %}
+      {{ item }}
+   {%- endfor %}
+   {% endif %}
+   {% endblock %}
+
+   {% block exceptions %}
+   {% if exceptions %}
+   .. rubric:: {{ _('Exceptions') }}
+
+   .. autosummary::
+      :nosignatures:
+      :toctree:
+      :template: autosummary/exception.rst
+   {% for item in exceptions %}
+      {{ item }}
+   {%- endfor %}
+   {% endif %}
+   {% endblock %}
+
+{% block modules %}
+{% if modules %}
+.. rubric:: Modules
+
+.. autosummary::
+   :toctree:
+   :recursive:
+   :template: autosummary/module.rst
+{% for item in modules %}
+   {{ item }}
+{%- endfor %}
+{% endif %}
+{% endblock %}

docs/api-doc.rst

@@ -0,0 +1,22 @@
+.. _api_documentation:
+
+=================
+API documentation
+=================
+
+.. automodule:: opensg
+    :no-members:
+    :no-undoc-members:
+    :no-inherited-members:
+
+    .. rubric:: Submodules
+
+    .. autosummary::
+        :toctree: apidoc
+        :recursive:
+        :template: autosummary/module.rst
+
+        compute_utils
+        io
+        mesh
+        solve