Fixed issues：#70, #72

wenbostar · Apr 1, 2024 · d01fb49 · d01fb49
1 parent 5ca7e90
commit d01fb49
Showing 1 changed file with 42 additions and 4 deletions.
diff --git a/src/main/java/PDVGUI/gui/utils/ImportPredictedDialog.java b/src/main/java/PDVGUI/gui/utils/ImportPredictedDialog.java
@@ -221,23 +221,61 @@ private String getModificationString(String originalMod) {
         String modificationString = "";
 
         if (modelListComboBox.getSelectedIndex() == 0 || modelListComboBox.getSelectedIndex() == 7) {
+            // AlphaPept_ms2_generic model
             if (originalMod.contains("of C")){
                 if (Math.abs(ptmFactory.getPTM(originalMod).getMass() -57.021464) < 0.01) {
                     modificationString = "[UNIMOD:4]";
+                }else{
+                    System.out.println("This modification is not supported:"+originalMod);
                 }
-            }
-            if (originalMod.contains("of M")){
+            } else if (originalMod.contains("of M")){
                 if (Math.abs(ptmFactory.getPTM(originalMod).getMass() -15.994915) < 0.01) {
                     modificationString = "[UNIMOD:35]";
+                }else{
+                    System.out.println("This modification is not supported:"+originalMod);
                 }
-            } if (originalMod.contains("of S") || originalMod.contains("of T") || originalMod.contains("of Y") || originalMod.contains("of STY")) {
+            } else if (originalMod.contains("of S") || originalMod.contains("of T") || originalMod.contains("of Y") || originalMod.contains("of STY")) {
                 if (Math.abs(ptmFactory.getPTM(originalMod).getMass() -79.966331) < 0.01) {
                     modificationString = "[UNIMOD:21]";
+                }else{
+                    System.out.println("This modification is not supported:"+originalMod);
                 }
-            } if (originalMod.contains("of N-term")) {
+            } else if (originalMod.contains("of N-term")) {
                 if (Math.abs(ptmFactory.getPTM(originalMod).getMass() - 42.010565) < 0.01) {
                     modificationString = "[UNIMOD:1]";
+                }else if (Math.abs(ptmFactory.getPTM(originalMod).getMass() - 43.005814) < 0.01) {
+                    modificationString = "[UNIMOD:5]";
+                }else{
+                    System.out.println("This modification is not supported:"+originalMod);
+                }
+            } else if (originalMod.contains("of Q")) {
+                if (Math.abs(ptmFactory.getPTM(originalMod).getMass() - 0.984016) < 0.01) {
+                    modificationString = "[UNIMOD:7]";
+                }
+            } else if (originalMod.contains("of N")) {
+                if (Math.abs(ptmFactory.getPTM(originalMod).getMass() - 0.984016) < 0.01) {
+                    modificationString = "[UNIMOD:7]";
+                }
+            } else{
+                System.out.println("This modification is not supported:"+originalMod);
+            }
+        } else if (modelListComboBox.getSelectedIndex() == 1 ||
+                modelListComboBox.getSelectedIndex() == 2 ||
+                modelListComboBox.getSelectedIndex() == 3 ||
+                modelListComboBox.getSelectedIndex() == 4 ||
+                modelListComboBox.getSelectedIndex() == 5 ||
+                modelListComboBox.getSelectedIndex() == 6) {
+            // Prosit model
+            if (originalMod.contains("of C")){
+                if (Math.abs(ptmFactory.getPTM(originalMod).getMass() -57.021464) < 0.01) {
+                    modificationString = "[UNIMOD:4]";
+                }
+            } else if (originalMod.contains("of M")){
+                if (Math.abs(ptmFactory.getPTM(originalMod).getMass() -15.994915) < 0.01) {
+                    modificationString = "[UNIMOD:35]";
                 }
+            } else{
+                System.out.println("This modification is not supported:"+originalMod);
             }
 
         }