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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,120 @@ | ||
| import { Divider, Stack, styled, Tooltip, TooltipProps, Typography, tooltipClasses, CircularProgress, IconOwnProps, TypographyProps, Grid2 } from '@mui/material' | ||
| import { gql } from '../../graphql/__generated__'; | ||
| import { useLazyQuery } from '@apollo/client'; | ||
| import { useMemo, Fragment, useState } from 'react'; | ||
| import NextLink from 'next/link'; | ||
| import { UrlObject } from 'url'; | ||
| import { ArrowOutward, Tab } from '@mui/icons-material'; | ||
|
|
||
| export interface GeneLinkProps { | ||
| geneName: string, | ||
| assembly: "GRCh38" | "mm10", | ||
| typographyProps?: TypographyProps | ||
| } | ||
|
|
||
| const GET_GENE_COORDS = gql(` | ||
| query getGeneLocation($name: String!, $assembly: String!) { | ||
| gene(name: [$name], assembly: $assembly, version: 40) { | ||
| coordinates { | ||
| chromosome | ||
| start | ||
| end | ||
| } | ||
| } | ||
| } | ||
| `) | ||
|
|
||
| const GeneLink = ({ geneName, assembly, typographyProps }: GeneLinkProps): React.JSX.Element => { | ||
| const [open, setOpen] = useState<boolean>(false) | ||
|
|
||
| const handleClose = () => { | ||
| setOpen(false); | ||
| }; | ||
|
|
||
| const handleOpen = () => { | ||
| getGeneCoords() | ||
| setOpen(true); | ||
| }; | ||
|
|
||
| const [getGeneCoords, { data: dataCoords, loading: loadingCoords, error: errorCoords, called: coordsWereFetched }] = useLazyQuery( | ||
| GET_GENE_COORDS, | ||
| { variables: { name: geneName, assembly: assembly } } | ||
| ) | ||
|
|
||
| const coordinates = dataCoords && dataCoords.gene.length > 0 && dataCoords.gene[0].coordinates | ||
|
|
||
| const geneExpressionLink = `/applets/gene-expression?assembly=${assembly}&gene=${geneName}` | ||
|
|
||
| const searchLink: UrlObject = useMemo(() => { | ||
| return coordinates ? ( | ||
| { | ||
| pathname: '/search', | ||
| query: { | ||
| assembly, | ||
| chromosome: coordinates.chromosome, | ||
| start: coordinates.start, | ||
| end: coordinates.end, | ||
| gene: geneName | ||
| } | ||
| }) : null | ||
| }, [coordinates]) | ||
|
|
||
| const StyledTypography = styled((props: TypographyProps) => | ||
| <Typography variant='body2' display={"inline"} textAlign={"center"} color="white" {...props} /> | ||
| )(() => ({ | ||
| '&:hover': { | ||
| textDecoration: "underline" | ||
| } | ||
| })); | ||
|
|
||
| const iconProps: IconOwnProps = { | ||
| fontSize: 'small', | ||
| sx: { display: "inline-flex", verticalAlign: "middle", p: 0 } | ||
| } | ||
|
|
||
| const linkStyles = { | ||
| flexGrow: 1, | ||
| minWidth: '130px', | ||
| display: 'flex', | ||
| justifyContent: 'center' | ||
| } | ||
|
|
||
| return ( | ||
| <Tooltip | ||
| open={open} | ||
| onOpen={handleOpen} | ||
| onClose={handleClose} | ||
| title={ | ||
| <Fragment> | ||
| <Stack | ||
| direction={"row"} | ||
| gap={1} | ||
| justifyContent={"space-between"} | ||
| divider={<Divider orientation='vertical' flexItem sx={{ backgroundColor: 'white' }} />} | ||
| > | ||
| <NextLink href={geneExpressionLink} target='_blank' style={linkStyles}> | ||
| <StyledTypography> | ||
| View <i>{geneName}</i> Gene Expression | ||
| <ArrowOutward {...iconProps} /> | ||
| </StyledTypography> | ||
| </NextLink> | ||
| {searchLink ? | ||
| <NextLink href={searchLink} target='_blank' style={linkStyles}> | ||
| <StyledTypography> | ||
| Search <i>{geneName}</i> on SCREEN | ||
| <ArrowOutward {...iconProps} /> | ||
| </StyledTypography> | ||
| </NextLink> | ||
| : | ||
| <CircularProgress size={"2rem"} /> | ||
| } | ||
| </Stack> | ||
| </Fragment> | ||
| } | ||
| > | ||
| <Typography variant='inherit' color='primary' {...typographyProps}><i>{geneName}</i></Typography> | ||
| </Tooltip> | ||
| ) | ||
| } | ||
|
|
||
| export default GeneLink |
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