Fix for Main Search

weng-lab · Jul 10, 2024 · 49faad3 · 49faad3
1 parent 15aafd1
commit 49faad3
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Showing 3 changed files with 8,612 additions and 5,870 deletions.
diff --git a/screen2.0/package.json b/screen2.0/package.json
@@ -93,5 +93,6 @@
     "not dead",
     "not ie <= 11",
     "not op_mini all"
-  ]
+  ],
+  "packageManager": "yarn@3.5.0+sha512.2dc70be5fce9f66756d25b00a888f3ca66f86b502b76750e72ba54cec89da767b938c54124595e26f868825688e0fe3552c26c76a330673343057acadd5cfcf2"
 }
diff --git a/screen2.0/src/common/lib/queries.ts b/screen2.0/src/common/lib/queries.ts
@@ -12,9 +12,7 @@ const cCRE_QUERY = gql`
     $accessions: [String!]
     $assembly: String!
     $cellType: String
-    $coord_chrom: String
-    $coord_end: Int
-    $coord_start: Int
+    $coordinates: [GenomicRangeInput]
     $element_type: String
     $gene_all_start: Int
     $gene_all_end: Int
@@ -45,9 +43,7 @@ const cCRE_QUERY = gql`
       assembly: $assembly
       accessions: $accessions
       cellType: $cellType
-      coord_chrom: $coord_chrom
-      coord_end: $coord_end
-      coord_start: $coord_start
+      coordinates: $coordinates
       element_type: $element_type
       gene_all_start: $gene_all_start
       gene_all_end: $gene_all_end
@@ -128,9 +124,7 @@ function cCRE_QUERY_VARIABLES(assembly: string, chromosome: string, start: numbe
   let vars = {
     uuid: null,
     assembly: assembly,
-    coord_chrom: chromosome,
-    coord_start: start,
-    coord_end: end,
+    coordinates: [{chromosome, start, end}],
     gene_all_start: 0,
     gene_all_end: 5000000,
     gene_pc_start: 0,
@@ -265,7 +259,7 @@ export async function MainQuery(assembly: string = null, chromosome: string = nu
   try {
     data = await getClient().query({
       query: cCRE_QUERY,
-      variables: cCRE_QUERY_VARIABLES(assembly, chromosome, start, end, biosample, nearbygenesdistancethreshold, nearbygeneslimit, accessions),
+      variables: cCRE_QUERY_VARIABLES(assembly, chromosome, start, end, biosample, nearbygenesdistancethreshold, nearbygeneslimit, accessions, noLimit),
       //Telling it to not cache, next js caches also and for things that exceed the 2mb cache limit it slows down substantially for some reason
       fetchPolicy: "no-cache",
     })