Setting up common build system.

.gitmodules

@@ -0,0 +1,9 @@
+[submodule "commonCMakeScripts"]
+	path = commonCMakeScripts
+	url = git@github.com:njoy/commonCMakeScripts.git
+[submodule "Catch"]
+	path = Catch
+	url = git@github.com:njoy/Catch.git
+[submodule "easyloggingpp"]
+	path = easyloggingpp
+	url = git@github.com:njoy/easyloggingpp.git

API/CMakeLists.txt

@@ -0,0 +1,21 @@
+if(${verbose_traversal})
+  message(STATUS "Entered API directory")
+endif(${verbose_traversal})
+
+set(headers "")
+list(APPEND headers
+  )
+
+foreach(header ${headers})
+  configure_file(
+    "${CMAKE_CURRENT_SOURCE_DIR}/${header}.hpp.in"
+    "${nuclearData_HEADER_DIR}/API/${header}.hpp"
+    COPYONLY
+    )
+endforeach(header)
+
+set(nuclearData_src "${nuclearData_src}" PARENT_SCOPE)
+
+if(${verbose_traversal})
+  message(STATUS "Exiting API directory")
+endif(${verbose_traversal})

CMakeLists.txt

@@ -0,0 +1,32 @@
+cmake_minimum_required( VERSION 3.2 )
+
+set(projectName "ENDFtk")
+set(projectVersion "0.1.0")
+
+if(NOT DEFINED commonCMakeScripts_path)
+  set(commonCMakeScripts_path "${CMAKE_SOURCE_DIR}/commonCMakeScripts")
+endif(NOT DEFINED commonCMakeScripts_path)
+
+include(subprojects.cmake)
+include(${commonCMakeScripts_path}/objectOriented.cmake)
+
+# Initialize a variable for collecting utility implementation components
+list(APPEND ${projectName}_src) # (empty list)
+list(APPEND ${projectName}_src_headers) # (empty list)
+list(APPEND ${projectName}_bin_headers) # (empty list)
+
+set(headers "")
+list(APPEND headers
+  "ENDFtk"
+  )
+
+foreach(header ${headers})
+  configure_file(
+    "${CMAKE_CURRENT_SOURCE_DIR}/${header}.hpp.in" 
+    "${ENDFtk_HEADER_DIR}/${header}.hpp"
+    COPYONLY
+    )
+endforeach(header)
+
+include(${commonCMakeScripts_path}/assemble.cmake)
+include(${commonCMakeScripts_path}/terminus.cmake)

ENDFtk.hpp.in

@@ -0,0 +1,15 @@
+#ifndef ENDFTK_HPP
+#define ENDFTK_HPP
+
+#include "easylogging++.h"
+
+namespace ENDFtk {
+
+/* faux forward declaration of nested namespaces */
+namespace API{}
+namespace implementation{}
+
+} // namespace ENDFtk
+
+#endif  // ENDFTK_HPP
+

LICENSE

@@ -0,0 +1,10 @@
+Copyright (c) 2016, Los Alamos National Security, LLC
+All rights reserved.
+Copyright 2016. Los Alamos National Security, LLC. This software was produced under U.S. Government contract DE-AC52-06NA25396 for Los Alamos National Laboratory (LANL), which is operated by Los Alamos National Security, LLC for the U.S. Department of Energy. The U.S. Government has rights to use, reproduce, and distribute this software.  NEITHER THE GOVERNMENT NOR LOS ALAMOS NATIONAL SECURITY, LLC MAKES ANY WARRANTY, EXPRESS OR IMPLIED, OR ASSUMES ANY LIABILITY FOR THE USE OF THIS SOFTWARE.  If software is modified to produce derivative works, such modified software should be clearly marked, so as not to confuse it with the version available from LANL.
+
+Additionally, redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+1.      Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+2.      Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+3.      Neither the name of Los Alamos National Security, LLC, Los Alamos National Laboratory, LANL, the U.S. Government, nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY LOS ALAMOS NATIONAL SECURITY, LLC AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL LOS ALAMOS NATIONAL SECURITY, LLC OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

fetchDependencies.py

@@ -0,0 +1,170 @@
+#! /usr/bin/env python
+
+'''
+A handy python script for working with component-based projects
+using submodules. This script is written a subset of python compatible
+with both Python 2 (version 2.6 or later) and Python 3 (any), so you
+shouldn't need to worry about which python version you're using.
+
+Within the NJOY21 scheme, each project repository composes a submodule
+for each of the project's (first-order) dependencies. This can lead to
+low-level projects (logging, testing, etc) being cloned many times when
+cloning recursively. This inflates the time required to clone the project,
+bloats the source directory, and the buffer-busting wave of terminal
+output just gives a false impression of the complexity of the project.
+
+In addition, submodules have the peculiarity of being associated with
+a particular commit rather than a particular branch. As a result,
+when a project is updated, any other project depending upon it must also
+be updated to benefit. This can amount to considerable overhead when 
+working on low-level projects.
+
+This script addresses both problems. Subproject repositories are cloned
+only once and follow the same composition scheme assumed by the CMake
+configuration script. After cloning, the subproject repository is updated
+to the development branch.
+
+The latter behavior may be disabled by invoking the script with the
+--no_update flag.
+'''
+
+try:
+  import argparse
+  import subprocess
+  import os
+
+  isWindows = (os.name == "nt")
+
+  def smart_clone( cloned_repositories,
+                   update_to_development ):
+    ''' 
+    A happy recursive function to clone components once, only once, and
+    with the expected composition
+    '''
+    import re
+
+    start_list_pattern = re.compile('\s*list\(\s*APPEND\s*subprojects.*\n',
+                                    re.IGNORECASE)
+
+    comment_line_pattern = re.compile('\s*\#.*')
+    subprojects = list()
+
+    if (os.path.exists("subprojects.cmake")):
+        with open("subprojects.cmake", "r") as f:
+
+            hasContent = False
+            for line in f:
+                if (start_list_pattern.match(line) != None):
+                    hasContent = True
+                    break
+
+            if (not hasContent): return
+
+            for line in f:
+                if (not comment_line_pattern.match(line)):
+                    line = line.replace('"', '')
+                    closing_position = line.find(')')
+                    line = line[:closing_position].strip()
+                    if (line != ""):
+                        subprojects.append(line)
+                    if (closing_position != -1):
+                        break
+
+        for subproject in subprojects:
+            if (not (subproject in cloned_repositories)):
+                print("")
+                print("----------------------------------------")
+                print("Fetching " + subproject + "...")
+                print("----------------------------------------")
+                print("")
+                if isWindows:
+                  subprocess.Popen(["powershell",
+                                    "git",
+                                    "submodule",
+                                    "update",
+                                    "-q",
+                                    "--init", 
+                                    "--",
+                                    subproject])
+
+                else:
+                  subprocess.call(["git",
+                                   "submodule",
+                                   "update",
+                                   "--init",
+                                   "--",
+                                   subproject])
+
+                os.chdir(subproject)
+                print("")
+                if (update_to_development):
+                    print("Updating to deploy-ready branch...")
+                    print("")
+                    if isWindows:
+                      subprocess.Popen(["powershell",
+                                        "git",
+                                        "pull",
+                                        "-q",
+                                        "origin",
+                                        "master"])
+                    else:
+                      subprocess.call(["git",
+                                       "pull",
+                                       "origin",
+                                       "master"])
+                cloned_repositories.add(subproject)
+                smart_clone( cloned_repositories,
+                             update_to_development )
+                os.chdir("..")
+
+  # end smart_clone function
+
+  parser = argparse.ArgumentParser()
+  parser.add_argument('--no_update', action='store_true')
+  update_to_development = not parser.parse_args().no_update
+  cloned_repositories = set()
+
+  print("")
+  print("----------------------------------------")
+  print("Fetching commonCMakeScripts...")
+  print("----------------------------------------")
+  print("")
+  if isWindows:
+    subprocess.Popen(["powershell",
+                      "git",
+                      "submodule",
+                      "update",
+                      "-q",
+                      "--init",
+                      "--",
+                      "commonCMakeScripts"])
+  else:
+    subprocess.call(["git",
+                     "submodule",
+                     "update",
+                     "--init",
+                     "--",
+                     "commonCMakeScripts"])
+  print("")
+  if (update_to_development):
+      print("Updating to deploy-ready branch...")
+      print("")
+      os.chdir("commonCMakeScripts")
+      if isWindows:
+        subprocess.Popen(["powershell",
+                          "git",
+                          "pull",
+                          "-q",
+                          "origin",
+                          "master"])
+      else:
+        subprocess.call(["git",
+                         "pull",
+                         "origin",
+                         "master"])
+      os.chdir("..")
+
+  smart_clone( cloned_repositories, update_to_development )
+except:
+  import pdb
+  pdb.set_trace()

implementation/CMakeLists.txt

@@ -0,0 +1,39 @@
+if(${verbose_traversal})
+  message(STATUS "Entered implementation directory")
+endif(${verbose_traversal})
+
+set(header_only_subdirs "")
+list(APPEND header_only_subdirs
+)
+
+set(subdirs "")
+list(APPEND subdirs
+  ${header_only_subdirs}
+  )
+
+foreach (subdir ${header_only_subdirs})
+  if(NOT(EXISTS "${nuclearData_HEADER_DIR}/implementation/${subdir}"))
+    file(MAKE_DIRECTORY "${nuclearData_HEADER_DIR}/implementation/${subdir}")
+  endif(NOT(EXISTS "${nuclearData_HEADER_DIR}/implementation/${subdir}"))
+endforeach (subdir)
+
+set(headers "")
+list(APPEND headers
+  ${subdirs}
+  )
+
+foreach(header ${headers})
+  configure_file(
+    "${CMAKE_CURRENT_SOURCE_DIR}/${header}.hpp.in"
+    "${nuclearData_HEADER_DIR}/implementation/${header}.hpp"
+    COPYONLY
+    )
+endforeach(header)
+
+foreach (subdir ${subdirs})
+  add_subdirectory( ${subdir} )
+endforeach (subdir)
+
+if(${verbose_traversal})
+  message(STATUS "Exiting implementation directory")
+endif(${verbose_traversal})

src/ENDFtk.cpp

@@ -0,0 +1,3 @@
+#include "ENDFtk.hpp"
+
+SHARE_EASYLOGGINGPP(el::setupLogging())

subprojects.cmake

@@ -0,0 +1,5 @@
+set(subprojects "")
+list(APPEND subprojects
+  "easyloggingpp"
+  "Catch"
+  )