Pinned Loading

1. Assemble-nuclear-rDNA-18S-and-28S-from-genomic-data-using-MITObim-loop Assemble-nuclear-rDNA-18S-and-28S-from-genomic-data-using-MITObim-loop Public

   A set of job files and explanations on how to assemble nuclear rDNA (18S and 28S) from genomic data using BBmap and MITObim

2. mitos-hydra-loop mitos-hydra-loop Public

   Run MITOS on Hydra using a loop with mitochondrial contigs in .fasta format.

3. fastp-hydra-loop fastp-hydra-loop Public

   Trim genomic raw reads using fastp on Hydra in a loop

4. getorganelle-hydra-loop getorganelle-hydra-loop Public

   Run getorganelle on hydra using a loop

5. mitofinder-trimmed-reads-hydra-loop mitofinder-trimmed-reads-hydra-loop Public

   Hydra job file that uses trimmed reads as input for Mitofinder, and runs them in a loop.

6. spades-hydra-loop spades-hydra-loop Public

   Run spades on hydra in a loop using trimmed reads