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  • City University of Hong Kong
  • Hong Kong

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  1. PStrain PStrain Public

    Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for…

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    Identify variants (snv, indel, sv) by mapping reads onto the reference.

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    Conda recipes for the bioconda channel.

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  5. RGC_analysis RGC_analysis Public

    Simulate the microbiome sample based on the RGC genomes

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  6. GutMeta_analysis_scripts GutMeta_analysis_scripts Public

    Forked from deepomicslab/GutMeta_analysis_scripts

    Python