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Add put method for Collections
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Change defaults for checksum-related API method keywords to False in
order to make behaviour and responsibility for the decision clearer.
API callers are now responsible for setting these flags to True where
they are needed.

Separate checksum retrieval, updates and verification more clearly.

Add a checkum keyword to DataObject::list.

Add checksum size/consistency check for zero-length data objects.
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kjsanger committed Sep 17, 2024
1 parent dbb2d7b commit efb5b15
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Showing 8 changed files with 465 additions and 39 deletions.
3 changes: 3 additions & 0 deletions Dockerfile.dev
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Expand Up @@ -17,6 +17,7 @@ RUN apt-get update && \
git \
make \
libbz2-dev \
libffi-dev \
libncurses-dev \
libreadline-dev \
libssl-dev \
Expand All @@ -43,6 +44,8 @@ COPY ./docker/install_pyenv.sh /app/docker/install_pyenv.sh

RUN /app/docker/install_pyenv.sh

ENV MAKE_OPTS="-j 8"

RUN pyenv install "$PYTHON_VERSION"
RUN pyenv global "$PYTHON_VERSION"

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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -265,7 +265,7 @@ distinguish between these circumstances.
## Requirements

- The `baton-do` executable from the [baton](https://github.com/wtsi-npg/baton)
iRODS client distribution.
iRODS client distribution. Version >=4.3.1 is required.
- The unit tests use the
[iRODS client icommands](https://github.com/irods/irods_client_icommands)
clients. These are not required during normal operation.
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3 changes: 2 additions & 1 deletion docker-compose.yml
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Expand Up @@ -3,7 +3,7 @@ services:
irods-server:
platform: linux/amd64
container_name: irods-server
image: "ghcr.io/wtsi-npg/ub-16.04-irods-4.2.7:latest"
image: "ghcr.io/wtsi-npg/ub-18.04-irods-4.2.11:latest"
ports:
- "127.0.0.1:1247:1247"
- "127.0.0.1:20000-20199:20000-20199"
Expand All @@ -26,6 +26,7 @@ services:
environment:
IRODS_ENVIRONMENT_FILE: "/home/appuser/.irods/irods_environment.json"
IRODS_PASSWORD: "irods"
IRODS_VERSION: "4.2.11"
depends_on:
irods-server:
condition: service_healthy
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