Update reps (#40)

* Use dockerhub version of alpine for compatability with recent singularity * Update to latest deps, use latest go * User more recent version of golangci-lint to test with
wtsi-ssg · Dec 3, 2024 · 491abfd · 491abfd
1 parent 61779cc
commit 491abfd
Show file tree

Hide file tree

Showing 5 changed files with 29 additions and 31 deletions.
diff --git a/.github/workflows/golangci-lint.yml b/.github/workflows/golangci-lint.yml
@@ -17,10 +17,10 @@ jobs:
     steps:
       - uses: actions/setup-go@v3
         with:
-          go-version: 1.22.4
+          go-version: 1.23.3
       - uses: actions/checkout@v3
       - name: golangci-lint
         uses: golangci/golangci-lint-action@v3
         with:
-          version: v1.59.1
+          version: v1.62.0
           only-new-issues: true
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -20,7 +20,7 @@ jobs:
     - name: Setup Go
       uses: actions/setup-go@v3
       with:
-        go-version: '1.22.4'
+        go-version: '1.23.3'
 
     - name: Run tests
       run: make test

diff --git a/container/run_test.go b/container/run_test.go
@@ -156,7 +156,7 @@ func TestRunReal(t *testing.T) {
 
 		defer cleanup()
 
-		cmd := SingularityRunCmd("library://sylabsed/linux/alpine", cmdFile, mounts)
+		cmd := SingularityRunCmd("docker://alpine", cmdFile, mounts)
 
 		actual, err := realTestTryCmd(cmd, homeDir)
 		So(err, ShouldBeNil)

diff --git a/go.mod b/go.mod
@@ -1,13 +1,11 @@
 module github.com/wtsi-ssg/wr
 
-go 1.21
-
-toolchain go1.22.0
+go 1.23
 
 require (
 	github.com/Microsoft/go-winio v0.6.2 // indirect
 	github.com/acarl005/stripansi v0.0.0-20180116102854-5a71ef0e047d
-	github.com/docker/docker v27.0.3+incompatible
+	github.com/docker/docker v27.3.1+incompatible
 	github.com/docker/go-connections v0.5.0 // indirect
 	github.com/go-stack/stack v1.8.1
 	github.com/hpcloud/tail v1.0.0
@@ -16,11 +14,11 @@ require (
 	github.com/morikuni/aec v1.0.0 // indirect
 	github.com/opencontainers/image-spec v1.1.0
 	github.com/ricochet2200/go-disk-usage/du v0.0.0-20210707232629-ac9918953285
-	github.com/rs/xid v1.5.0
+	github.com/rs/xid v1.6.0
 	github.com/sb10/l15h v0.0.0-20170510122137-64c488bf8e22
 	github.com/smartystreets/goconvey v1.6.4
 	golang.org/x/net v0.26.0 // indirect
-	golang.org/x/sys v0.21.0 // indirect
+	golang.org/x/sys v0.27.0 // indirect
 )
 
 require (
@@ -40,13 +38,13 @@ require (
 	github.com/opencontainers/go-digest v1.0.0 // indirect
 	github.com/pkg/errors v0.9.1 // indirect
 	github.com/smartystreets/assertions v0.0.0-20180927180507-b2de0cb4f26d // indirect
-	go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.52.0 // indirect
-	go.opentelemetry.io/otel v1.27.0 // indirect
+	go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.57.0 // indirect
+	go.opentelemetry.io/otel v1.32.0 // indirect
 	go.opentelemetry.io/otel/exporters/otlp/otlptrace/otlptracehttp v1.27.0 // indirect
-	go.opentelemetry.io/otel/metric v1.27.0 // indirect
+	go.opentelemetry.io/otel/metric v1.32.0 // indirect
 	go.opentelemetry.io/otel/sdk v1.27.0 // indirect
-	go.opentelemetry.io/otel/trace v1.27.0 // indirect
-	golang.org/x/term v0.21.0 // indirect
+	go.opentelemetry.io/otel/trace v1.32.0 // indirect
+	golang.org/x/term v0.26.0 // indirect
 	golang.org/x/time v0.0.0-20210723032227-1f47c861a9ac // indirect
 	gopkg.in/fsnotify.v1 v1.4.7 // indirect
 	gopkg.in/tomb.v1 v1.0.0-20141024135613-dd632973f1e7 // indirect

diff --git a/go.sum b/go.sum
@@ -12,8 +12,8 @@ github.com/davecgh/go-spew v1.1.1 h1:vj9j/u1bqnvCEfJOwUhtlOARqs3+rkHYY13jYWTU97c
 github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
 github.com/distribution/reference v0.6.0 h1:0IXCQ5g4/QMHHkarYzh5l+u8T3t73zM5QvfrDyIgxBk=
 github.com/distribution/reference v0.6.0/go.mod h1:BbU0aIcezP1/5jX/8MP0YiH4SdvB5Y4f/wlDRiLyi3E=
-github.com/docker/docker v27.0.3+incompatible h1:aBGI9TeQ4MPlhquTQKq9XbK79rKFVwXNUAYz9aXyEBE=
-github.com/docker/docker v27.0.3+incompatible/go.mod h1:eEKB0N0r5NX/I1kEveEz05bcu8tLC/8azJZsviup8Sk=
+github.com/docker/docker v27.3.1+incompatible h1:KttF0XoteNTicmUtBO0L2tP+J7FGRFTjaEF4k6WdhfI=
+github.com/docker/docker v27.3.1+incompatible/go.mod h1:eEKB0N0r5NX/I1kEveEz05bcu8tLC/8azJZsviup8Sk=
 github.com/docker/go-connections v0.5.0 h1:USnMq7hx7gwdVZq1L49hLXaFtUdTADjXGp+uj1Br63c=
 github.com/docker/go-connections v0.5.0/go.mod h1:ov60Kzw0kKElRwhNs9UlUHAE/F9Fe6GLaXnqyDdmEXc=
 github.com/docker/go-units v0.5.0 h1:69rxXcBk27SvSaaxTtLh/8llcHD8vYHT7WSdRZ/jvr4=
@@ -71,8 +71,8 @@ github.com/pmezard/go-difflib v1.0.0 h1:4DBwDE0NGyQoBHbLQYPwSUPoCMWR5BEzIk/f1lZb
 github.com/pmezard/go-difflib v1.0.0/go.mod h1:iKH77koFhYxTK1pcRnkKkqfTogsbg7gZNVY4sRDYZ/4=
 github.com/ricochet2200/go-disk-usage/du v0.0.0-20210707232629-ac9918953285 h1:d54EL9l+XteliUfUCGsEwwuk65dmmxX85VXF+9T6+50=
 github.com/ricochet2200/go-disk-usage/du v0.0.0-20210707232629-ac9918953285/go.mod h1:fxIDly1xtudczrZeOOlfaUvd2OPb2qZAPuWdU2BsBTk=
-github.com/rs/xid v1.5.0 h1:mKX4bl4iPYJtEIxp6CYiUuLQ/8DYMoz0PUdtGgMFRVc=
-github.com/rs/xid v1.5.0/go.mod h1:trrq9SKmegXys3aeAKXMUTdJsYXVwGY3RLcfgqegfbg=
+github.com/rs/xid v1.6.0 h1:fV591PaemRlL6JfRxGDEPl69wICngIQ3shQtzfy2gxU=
+github.com/rs/xid v1.6.0/go.mod h1:7XoLgs4eV+QndskICGsho+ADou8ySMSjJKDIan90Nz0=
 github.com/sb10/l15h v0.0.0-20170510122137-64c488bf8e22 h1:1ECjRVBhG3NLRKTbvZ07fIQ5BiLnZFc3qLxqM6H6Rn8=
 github.com/sb10/l15h v0.0.0-20170510122137-64c488bf8e22/go.mod h1:s4RlXXC/L+BTwtp3zv5UREYJOftKFBWLsUCILdaMYeU=
 github.com/sirupsen/logrus v1.4.2/go.mod h1:tLMulIdttU9McNUspp0xgXVQah82FyeX6MwdIuYE2rE=
@@ -89,20 +89,20 @@ github.com/stretchr/testify v1.9.0 h1:HtqpIVDClZ4nwg75+f6Lvsy/wHu+3BoSGCbBAcpTsT
 github.com/stretchr/testify v1.9.0/go.mod h1:r2ic/lqez/lEtzL7wO/rwa5dbSLXVDPFyf8C91i36aY=
 github.com/yuin/goldmark v1.1.27/go.mod h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9decYSb74=
 github.com/yuin/goldmark v1.2.1/go.mod h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9decYSb74=
-go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.52.0 h1:9l89oX4ba9kHbBol3Xin3leYJ+252h0zszDtBwyKe2A=
-go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.52.0/go.mod h1:XLZfZboOJWHNKUv7eH0inh0E9VV6eWDFB/9yJyTLPp0=
-go.opentelemetry.io/otel v1.27.0 h1:9BZoF3yMK/O1AafMiQTVu0YDj5Ea4hPhxCs7sGva+cg=
-go.opentelemetry.io/otel v1.27.0/go.mod h1:DMpAK8fzYRzs+bi3rS5REupisuqTheUlSZJ1WnZaPAQ=
+go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.57.0 h1:DheMAlT6POBP+gh8RUH19EOTnQIor5QE0uSRPtzCpSw=
+go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.57.0/go.mod h1:wZcGmeVO9nzP67aYSLDqXNWK87EZWhi7JWj1v7ZXf94=
+go.opentelemetry.io/otel v1.32.0 h1:WnBN+Xjcteh0zdk01SVqV55d/m62NJLJdIyb4y/WO5U=
+go.opentelemetry.io/otel v1.32.0/go.mod h1:00DCVSB0RQcnzlwyTfqtxSm+DRr9hpYrHjNGiBHVQIg=
 go.opentelemetry.io/otel/exporters/otlp/otlptrace v1.27.0 h1:R9DE4kQ4k+YtfLI2ULwX82VtNQ2J8yZmA7ZIF/D+7Mc=
 go.opentelemetry.io/otel/exporters/otlp/otlptrace v1.27.0/go.mod h1:OQFyQVrDlbe+R7xrEyDr/2Wr67Ol0hRUgsfA+V5A95s=
 go.opentelemetry.io/otel/exporters/otlp/otlptrace/otlptracehttp v1.27.0 h1:QY7/0NeRPKlzusf40ZE4t1VlMKbqSNT7cJRYzWuja0s=
 go.opentelemetry.io/otel/exporters/otlp/otlptrace/otlptracehttp v1.27.0/go.mod h1:HVkSiDhTM9BoUJU8qE6j2eSWLLXvi1USXjyd2BXT8PY=
-go.opentelemetry.io/otel/metric v1.27.0 h1:hvj3vdEKyeCi4YaYfNjv2NUje8FqKqUY8IlF0FxV/ik=
-go.opentelemetry.io/otel/metric v1.27.0/go.mod h1:mVFgmRlhljgBiuk/MP/oKylr4hs85GZAylncepAX/ak=
+go.opentelemetry.io/otel/metric v1.32.0 h1:xV2umtmNcThh2/a/aCP+h64Xx5wsj8qqnkYZktzNa0M=
+go.opentelemetry.io/otel/metric v1.32.0/go.mod h1:jH7CIbbK6SH2V2wE16W05BHCtIDzauciCRLoc/SyMv8=
 go.opentelemetry.io/otel/sdk v1.27.0 h1:mlk+/Y1gLPLn84U4tI8d3GNJmGT/eXe3ZuOXN9kTWmI=
 go.opentelemetry.io/otel/sdk v1.27.0/go.mod h1:Ha9vbLwJE6W86YstIywK2xFfPjbWlCuwPtMkKdz/Y4A=
-go.opentelemetry.io/otel/trace v1.27.0 h1:IqYb813p7cmbHk0a5y6pD5JPakbVfftRXABGt5/Rscw=
-go.opentelemetry.io/otel/trace v1.27.0/go.mod h1:6RiD1hkAprV4/q+yd2ln1HG9GoPx39SuvvstaLBl+l4=
+go.opentelemetry.io/otel/trace v1.32.0 h1:WIC9mYrXf8TmY/EXuULKc8hR17vE+Hjv2cssQDe03fM=
+go.opentelemetry.io/otel/trace v1.32.0/go.mod h1:+i4rkvCraA+tG6AzwloGaCtkx53Fa+L+V8e9a7YvhT8=
 go.opentelemetry.io/proto/otlp v1.2.0 h1:pVeZGk7nXDC9O2hncA6nHldxEjm6LByfA2aN8IOkz94=
 go.opentelemetry.io/proto/otlp v1.2.0/go.mod h1:gGpR8txAl5M03pDhMC79G6SdqNV26naRm/KDsgaHD8A=
 golang.org/x/crypto v0.0.0-20190308221718-c2843e01d9a2/go.mod h1:djNgcEr1/C05ACkg1iLfiJU5Ep61QUkGW8qpdssI0+w=
@@ -128,10 +128,10 @@ golang.org/x/sys v0.0.0-20200302150141-5c8b2ff67527/go.mod h1:h1NjWce9XRLGQEsW7w
 golang.org/x/sys v0.0.0-20200930185726-fdedc70b468f/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20220811171246-fbc7d0a398ab/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
 golang.org/x/sys v0.6.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
-golang.org/x/sys v0.21.0 h1:rF+pYz3DAGSQAxAu1CbC7catZg4ebC4UIeIhKxBZvws=
-golang.org/x/sys v0.21.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA=
-golang.org/x/term v0.21.0 h1:WVXCp+/EBEHOj53Rvu+7KiT/iElMrO8ACK16SMZ3jaA=
-golang.org/x/term v0.21.0/go.mod h1:ooXLefLobQVslOqselCNF4SxFAaoS6KujMbsGzSDmX0=
+golang.org/x/sys v0.27.0 h1:wBqf8DvsY9Y/2P8gAfPDEYNuS30J4lPHJxXSb/nJZ+s=
+golang.org/x/sys v0.27.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA=
+golang.org/x/term v0.26.0 h1:WEQa6V3Gja/BhNxg540hBip/kkaYtRg3cxg4oXSw4AU=
+golang.org/x/term v0.26.0/go.mod h1:Si5m1o57C5nBNQo5z1iq+XDijt21BDBDp2bK0QI8e3E=
 golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
 golang.org/x/text v0.3.3/go.mod h1:5Zoc/QRtKVWzQhOtBMvqHzDpF6irO9z98xDceosuGiQ=
 golang.org/x/text v0.16.0 h1:a94ExnEXNtEwYLGJSIUxnWoxoRz/ZcCsV63ROupILh4=