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Update reps #40

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merged 3 commits into from
Dec 3, 2024
Merged

Update reps #40

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5c4b4b0
Use dockerhub version of alpine for compatability with recent singula…
sb10 Dec 3, 2024
0598288
Update to latest deps, use latest go
sb10 Dec 3, 2024
3496c7e
User more recent version
sb10 Dec 3, 2024
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4 changes: 2 additions & 2 deletions .github/workflows/golangci-lint.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -17,10 +17,10 @@ jobs:
steps:
- uses: actions/setup-go@v3
with:
go-version: 1.22.4
go-version: 1.23.3
- uses: actions/checkout@v3
- name: golangci-lint
uses: golangci/golangci-lint-action@v3
with:
version: v1.59.1
version: v1.62.0
only-new-issues: true
2 changes: 1 addition & 1 deletion .github/workflows/tests.yml
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Expand Up @@ -20,7 +20,7 @@ jobs:
- name: Setup Go
uses: actions/setup-go@v3
with:
go-version: '1.22.4'
go-version: '1.23.3'

- name: Run tests
run: make test
Expand Down
2 changes: 1 addition & 1 deletion container/run_test.go
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Expand Up @@ -156,7 +156,7 @@ func TestRunReal(t *testing.T) {

defer cleanup()

cmd := SingularityRunCmd("library://sylabsed/linux/alpine", cmdFile, mounts)
cmd := SingularityRunCmd("docker://alpine", cmdFile, mounts)

actual, err := realTestTryCmd(cmd, homeDir)
So(err, ShouldBeNil)
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20 changes: 9 additions & 11 deletions go.mod
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@@ -1,13 +1,11 @@
module github.com/wtsi-ssg/wr

go 1.21

toolchain go1.22.0
go 1.23

require (
github.com/Microsoft/go-winio v0.6.2 // indirect
github.com/acarl005/stripansi v0.0.0-20180116102854-5a71ef0e047d
github.com/docker/docker v27.0.3+incompatible
github.com/docker/docker v27.3.1+incompatible
github.com/docker/go-connections v0.5.0 // indirect
github.com/go-stack/stack v1.8.1
github.com/hpcloud/tail v1.0.0
Expand All @@ -16,11 +14,11 @@ require (
github.com/morikuni/aec v1.0.0 // indirect
github.com/opencontainers/image-spec v1.1.0
github.com/ricochet2200/go-disk-usage/du v0.0.0-20210707232629-ac9918953285
github.com/rs/xid v1.5.0
github.com/rs/xid v1.6.0
github.com/sb10/l15h v0.0.0-20170510122137-64c488bf8e22
github.com/smartystreets/goconvey v1.6.4
golang.org/x/net v0.26.0 // indirect
golang.org/x/sys v0.21.0 // indirect
golang.org/x/sys v0.27.0 // indirect
)

require (
Expand All @@ -40,13 +38,13 @@ require (
github.com/opencontainers/go-digest v1.0.0 // indirect
github.com/pkg/errors v0.9.1 // indirect
github.com/smartystreets/assertions v0.0.0-20180927180507-b2de0cb4f26d // indirect
go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.52.0 // indirect
go.opentelemetry.io/otel v1.27.0 // indirect
go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.57.0 // indirect
go.opentelemetry.io/otel v1.32.0 // indirect
go.opentelemetry.io/otel/exporters/otlp/otlptrace/otlptracehttp v1.27.0 // indirect
go.opentelemetry.io/otel/metric v1.27.0 // indirect
go.opentelemetry.io/otel/metric v1.32.0 // indirect
go.opentelemetry.io/otel/sdk v1.27.0 // indirect
go.opentelemetry.io/otel/trace v1.27.0 // indirect
golang.org/x/term v0.21.0 // indirect
go.opentelemetry.io/otel/trace v1.32.0 // indirect
golang.org/x/term v0.26.0 // indirect
golang.org/x/time v0.0.0-20210723032227-1f47c861a9ac // indirect
gopkg.in/fsnotify.v1 v1.4.7 // indirect
gopkg.in/tomb.v1 v1.0.0-20141024135613-dd632973f1e7 // indirect
Expand Down
32 changes: 16 additions & 16 deletions go.sum
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Original file line number Diff line number Diff line change
Expand Up @@ -12,8 +12,8 @@ github.com/davecgh/go-spew v1.1.1 h1:vj9j/u1bqnvCEfJOwUhtlOARqs3+rkHYY13jYWTU97c
github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
github.com/distribution/reference v0.6.0 h1:0IXCQ5g4/QMHHkarYzh5l+u8T3t73zM5QvfrDyIgxBk=
github.com/distribution/reference v0.6.0/go.mod h1:BbU0aIcezP1/5jX/8MP0YiH4SdvB5Y4f/wlDRiLyi3E=
github.com/docker/docker v27.0.3+incompatible h1:aBGI9TeQ4MPlhquTQKq9XbK79rKFVwXNUAYz9aXyEBE=
github.com/docker/docker v27.0.3+incompatible/go.mod h1:eEKB0N0r5NX/I1kEveEz05bcu8tLC/8azJZsviup8Sk=
github.com/docker/docker v27.3.1+incompatible h1:KttF0XoteNTicmUtBO0L2tP+J7FGRFTjaEF4k6WdhfI=
github.com/docker/docker v27.3.1+incompatible/go.mod h1:eEKB0N0r5NX/I1kEveEz05bcu8tLC/8azJZsviup8Sk=
github.com/docker/go-connections v0.5.0 h1:USnMq7hx7gwdVZq1L49hLXaFtUdTADjXGp+uj1Br63c=
github.com/docker/go-connections v0.5.0/go.mod h1:ov60Kzw0kKElRwhNs9UlUHAE/F9Fe6GLaXnqyDdmEXc=
github.com/docker/go-units v0.5.0 h1:69rxXcBk27SvSaaxTtLh/8llcHD8vYHT7WSdRZ/jvr4=
Expand Down Expand Up @@ -71,8 +71,8 @@ github.com/pmezard/go-difflib v1.0.0 h1:4DBwDE0NGyQoBHbLQYPwSUPoCMWR5BEzIk/f1lZb
github.com/pmezard/go-difflib v1.0.0/go.mod h1:iKH77koFhYxTK1pcRnkKkqfTogsbg7gZNVY4sRDYZ/4=
github.com/ricochet2200/go-disk-usage/du v0.0.0-20210707232629-ac9918953285 h1:d54EL9l+XteliUfUCGsEwwuk65dmmxX85VXF+9T6+50=
github.com/ricochet2200/go-disk-usage/du v0.0.0-20210707232629-ac9918953285/go.mod h1:fxIDly1xtudczrZeOOlfaUvd2OPb2qZAPuWdU2BsBTk=
github.com/rs/xid v1.5.0 h1:mKX4bl4iPYJtEIxp6CYiUuLQ/8DYMoz0PUdtGgMFRVc=
github.com/rs/xid v1.5.0/go.mod h1:trrq9SKmegXys3aeAKXMUTdJsYXVwGY3RLcfgqegfbg=
github.com/rs/xid v1.6.0 h1:fV591PaemRlL6JfRxGDEPl69wICngIQ3shQtzfy2gxU=
github.com/rs/xid v1.6.0/go.mod h1:7XoLgs4eV+QndskICGsho+ADou8ySMSjJKDIan90Nz0=
github.com/sb10/l15h v0.0.0-20170510122137-64c488bf8e22 h1:1ECjRVBhG3NLRKTbvZ07fIQ5BiLnZFc3qLxqM6H6Rn8=
github.com/sb10/l15h v0.0.0-20170510122137-64c488bf8e22/go.mod h1:s4RlXXC/L+BTwtp3zv5UREYJOftKFBWLsUCILdaMYeU=
github.com/sirupsen/logrus v1.4.2/go.mod h1:tLMulIdttU9McNUspp0xgXVQah82FyeX6MwdIuYE2rE=
Expand All @@ -89,20 +89,20 @@ github.com/stretchr/testify v1.9.0 h1:HtqpIVDClZ4nwg75+f6Lvsy/wHu+3BoSGCbBAcpTsT
github.com/stretchr/testify v1.9.0/go.mod h1:r2ic/lqez/lEtzL7wO/rwa5dbSLXVDPFyf8C91i36aY=
github.com/yuin/goldmark v1.1.27/go.mod h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9decYSb74=
github.com/yuin/goldmark v1.2.1/go.mod h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9decYSb74=
go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.52.0 h1:9l89oX4ba9kHbBol3Xin3leYJ+252h0zszDtBwyKe2A=
go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.52.0/go.mod h1:XLZfZboOJWHNKUv7eH0inh0E9VV6eWDFB/9yJyTLPp0=
go.opentelemetry.io/otel v1.27.0 h1:9BZoF3yMK/O1AafMiQTVu0YDj5Ea4hPhxCs7sGva+cg=
go.opentelemetry.io/otel v1.27.0/go.mod h1:DMpAK8fzYRzs+bi3rS5REupisuqTheUlSZJ1WnZaPAQ=
go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.57.0 h1:DheMAlT6POBP+gh8RUH19EOTnQIor5QE0uSRPtzCpSw=
go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.57.0/go.mod h1:wZcGmeVO9nzP67aYSLDqXNWK87EZWhi7JWj1v7ZXf94=
go.opentelemetry.io/otel v1.32.0 h1:WnBN+Xjcteh0zdk01SVqV55d/m62NJLJdIyb4y/WO5U=
go.opentelemetry.io/otel v1.32.0/go.mod h1:00DCVSB0RQcnzlwyTfqtxSm+DRr9hpYrHjNGiBHVQIg=
go.opentelemetry.io/otel/exporters/otlp/otlptrace v1.27.0 h1:R9DE4kQ4k+YtfLI2ULwX82VtNQ2J8yZmA7ZIF/D+7Mc=
go.opentelemetry.io/otel/exporters/otlp/otlptrace v1.27.0/go.mod h1:OQFyQVrDlbe+R7xrEyDr/2Wr67Ol0hRUgsfA+V5A95s=
go.opentelemetry.io/otel/exporters/otlp/otlptrace/otlptracehttp v1.27.0 h1:QY7/0NeRPKlzusf40ZE4t1VlMKbqSNT7cJRYzWuja0s=
go.opentelemetry.io/otel/exporters/otlp/otlptrace/otlptracehttp v1.27.0/go.mod h1:HVkSiDhTM9BoUJU8qE6j2eSWLLXvi1USXjyd2BXT8PY=
go.opentelemetry.io/otel/metric v1.27.0 h1:hvj3vdEKyeCi4YaYfNjv2NUje8FqKqUY8IlF0FxV/ik=
go.opentelemetry.io/otel/metric v1.27.0/go.mod h1:mVFgmRlhljgBiuk/MP/oKylr4hs85GZAylncepAX/ak=
go.opentelemetry.io/otel/metric v1.32.0 h1:xV2umtmNcThh2/a/aCP+h64Xx5wsj8qqnkYZktzNa0M=
go.opentelemetry.io/otel/metric v1.32.0/go.mod h1:jH7CIbbK6SH2V2wE16W05BHCtIDzauciCRLoc/SyMv8=
go.opentelemetry.io/otel/sdk v1.27.0 h1:mlk+/Y1gLPLn84U4tI8d3GNJmGT/eXe3ZuOXN9kTWmI=
go.opentelemetry.io/otel/sdk v1.27.0/go.mod h1:Ha9vbLwJE6W86YstIywK2xFfPjbWlCuwPtMkKdz/Y4A=
go.opentelemetry.io/otel/trace v1.27.0 h1:IqYb813p7cmbHk0a5y6pD5JPakbVfftRXABGt5/Rscw=
go.opentelemetry.io/otel/trace v1.27.0/go.mod h1:6RiD1hkAprV4/q+yd2ln1HG9GoPx39SuvvstaLBl+l4=
go.opentelemetry.io/otel/trace v1.32.0 h1:WIC9mYrXf8TmY/EXuULKc8hR17vE+Hjv2cssQDe03fM=
go.opentelemetry.io/otel/trace v1.32.0/go.mod h1:+i4rkvCraA+tG6AzwloGaCtkx53Fa+L+V8e9a7YvhT8=
go.opentelemetry.io/proto/otlp v1.2.0 h1:pVeZGk7nXDC9O2hncA6nHldxEjm6LByfA2aN8IOkz94=
go.opentelemetry.io/proto/otlp v1.2.0/go.mod h1:gGpR8txAl5M03pDhMC79G6SdqNV26naRm/KDsgaHD8A=
golang.org/x/crypto v0.0.0-20190308221718-c2843e01d9a2/go.mod h1:djNgcEr1/C05ACkg1iLfiJU5Ep61QUkGW8qpdssI0+w=
Expand All @@ -128,10 +128,10 @@ golang.org/x/sys v0.0.0-20200302150141-5c8b2ff67527/go.mod h1:h1NjWce9XRLGQEsW7w
golang.org/x/sys v0.0.0-20200930185726-fdedc70b468f/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
golang.org/x/sys v0.0.0-20220811171246-fbc7d0a398ab/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
golang.org/x/sys v0.6.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
golang.org/x/sys v0.21.0 h1:rF+pYz3DAGSQAxAu1CbC7catZg4ebC4UIeIhKxBZvws=
golang.org/x/sys v0.21.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA=
golang.org/x/term v0.21.0 h1:WVXCp+/EBEHOj53Rvu+7KiT/iElMrO8ACK16SMZ3jaA=
golang.org/x/term v0.21.0/go.mod h1:ooXLefLobQVslOqselCNF4SxFAaoS6KujMbsGzSDmX0=
golang.org/x/sys v0.27.0 h1:wBqf8DvsY9Y/2P8gAfPDEYNuS30J4lPHJxXSb/nJZ+s=
golang.org/x/sys v0.27.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA=
golang.org/x/term v0.26.0 h1:WEQa6V3Gja/BhNxg540hBip/kkaYtRg3cxg4oXSw4AU=
golang.org/x/term v0.26.0/go.mod h1:Si5m1o57C5nBNQo5z1iq+XDijt21BDBDp2bK0QI8e3E=
golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
golang.org/x/text v0.3.3/go.mod h1:5Zoc/QRtKVWzQhOtBMvqHzDpF6irO9z98xDceosuGiQ=
golang.org/x/text v0.16.0 h1:a94ExnEXNtEwYLGJSIUxnWoxoRz/ZcCsV63ROupILh4=
Expand Down
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