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xuan13hao committed Jan 6, 2025
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7 changes: 7 additions & 0 deletions README.md
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**VATAligner** (Versatile Alignment Tool) is a fast and efficient multi-purpose sequence aligner. It supports the alignment of both short and long nucleotide sequences, as well as protein homology searches, offering a flexible solution for various sequence analysis needs.

## Prerequisites
Required for zlib, and Boost
```console
dnf install zlib zlib-devel
dnf install boost-devel
```

## Features
- Supports both DNA and protein sequence alignments.
- High-performance alignment with multi-threading capabilities.
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- **Output Formats**:
- Alignment results can be saved in `tab`, `sam`, or `paf` formats by specifying `--outfmt` in the command.

For further assistance, refer to the documentation or contact the VAT development team.
For further assistance, refer to the documentation or contact the VAT development team.

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