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1. DEqMS DEqMS Public

   DEqMS is a tool for quantitative proteomic analysis

   R 24 3

2. SpliceVista SpliceVista Public

   Splice variant analysis in shotgun proteomics data

   Python 10 2

3. SpectrumAI SpectrumAI Public

   R script to automatically inspect MS2 spectra of single-subsititution peptide identifications

   R 8 5

4. trypsin trypsin Public

   An in silico trypsin digestion tool

   Python 4 1

5. sorf_analysis sorf_analysis Public

   python and R scripts for sORF analysis

   Python

6. lehtiolab/proteogenomics-analysis-workflow lehtiolab/proteogenomics-analysis-workflow Public

   IPAW: a Nextflow workflow for proteogenomics

   Python 28 9