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Updated README.md
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ychuest committed Feb 12, 2025
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Expand Up @@ -87,6 +87,7 @@ Awesome-LLMs-meet-genomes is a collection of state-of-the-art, novel, exciting L
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| 2025.02 | **GENERator: A Long-Context Generative Genomic Foundation Model** | arXiv | [link](https://arxiv.org/abs/2502.07272) | [link](https://github.com/GenerTeam/GENERator) |
| 2025.02 | **Omni-DNA: A Unified Genomic Foundation Model for Cross-Modal and Multi-Task Learning** | arXiv | [link](https://arxiv.org/abs/2502.03499) | [link](https://huggingface.co/collections/zehui127/omni-dna-67a2230c352d4fd8f4d1a4bd) |
| 2025.01 | **MutBERT: Probabilistic Genome Representation Improves Genomics Foundation Models** | BioXiv | [link](https://www.biorxiv.org/content/10.1101/2025.01.23.634452v1.abstract) | [link](https://github.com/ai4nucleome/mutBERT) |
| 2025.01 | **GENA-LM: a family of open-source foundational DNA language models for long sequences** | Nucleic Acids Research | [link](https://academic.oup.com/nar/article/53/2/gkae1310/7954523) | [link](https://github.com/AIRI-Institute/GENA_LM) |
| 2024.12 | **EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics** | Genome Biology | [link](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-024-03449-7) | [link](https://github.com/ZjGaothu/EpiGePT) |
| 2024.11 | **VIRALpre: Genomic Foundation Model Embedding Fused with K-mer Feature for Virus Identification** | bioRxiv | [link](https://www.biorxiv.org/content/10.1101/2024.11.12.623150v1.abstract) | - |
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