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Employing TemporaryDirectory helps prevent issues when utilizing Snak…
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…emake
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dolittle007 committed Apr 2, 2024
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19 changes: 19 additions & 0 deletions .gitignore
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.mypy_cache/
/.coverage
/.coverage.*
/.nox/
/.python-version
/.pytype/
/dist/
/debug/
/dependency/
/build/
/dependency/
/docs/_build/
/src/*.egg-info/
__pycache__/

# editor
profile/
.idea/
.run/
4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -6,10 +6,10 @@ A computational workflow for exitron splicing identification

Prerequisites
----------------
You need Python 3.7 to run ScanExitron.
You need Python 3.12 to run ScanExitron.

### install necessary python packages via anaconda
Install [anaconda](https://www.anaconda.com/download/) (python 3.7) firstly, then install dependent packages via conda in bioconda channel.
Install [anaconda](https://www.anaconda.com/download/) (python 3.12) firstly, then install dependent packages via conda in bioconda channel.
```
conda install -c bioconda samtools
conda install -c bioconda bedtools
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