Update test

yuanx749 · Feb 4, 2024 · c74209c · c74209c
1 parent 153a0a5
commit c74209c
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/docs/examples/examples.ipynb b/docs/examples/examples.ipynb
@@ -400,7 +400,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "Cluster the sequences using cd-hit."
+    "Cluster the sequences using cd-hit. [Path](#pathlib) objects can also be used in arguments."
    ]
   },
   {

diff --git a/pycdhit/__init__.py b/pycdhit/__init__.py
@@ -4,7 +4,7 @@
 from ._commands import *  # noqa: F403
 from ._io import *  # noqa: F403
 
-VERSION = "0.10.0"
+VERSION = "0.11.0"
 
 __all__ = [  # noqa: F405
     "CommandBase",

diff --git a/tests/test_commands.py b/tests/test_commands.py
@@ -30,7 +30,7 @@ def test_cd_hit(cdhit_temp_files):
     in_path, out_path = cdhit_temp_files
     in_path.write_text(FASTA)
     try:
-        res = _commands.cd_hit_est(i=str(in_path), o=str(out_path))
+        res = _commands.cd_hit_est(i=in_path, o=out_path)
         assert isinstance(res, CompletedProcess)
     except (CalledProcessError, FileNotFoundError):
         pass