update windows jags

.github/workflows/R-CMD-check.yaml

@@ -1,15 +1,11 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
-on:
-  push:
-    branches: [main, master]
-  pull_request:
-    branches: [main, master]
+on: [push, pull_request]
 
-name: R-CMD-check
+name: check
 
 jobs:
-  R-CMD-check:
+  check:
     runs-on: ${{ matrix.config.os }}
 
     name: ${{ matrix.config.os }} (${{ matrix.config.r }})
@@ -18,46 +14,32 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: macOS-latest,   r: 'release'}
+          - {os: macOS-latest,   r: 'release', rtools: ''}
           - {os: windows-latest, r: 'release', rtools: '42'}
-          - {os: ubuntu-latest,   r: 'release'}
+          # - {os: ubuntu-latest,   r: 'devel', rtools: '' , http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release', rtools: ''}
+          # - {os: ubuntu-latest,   r: 'oldrel-1', rtools: ''}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      JAGS_HOME: 'C:\JAGS-4.3.0.exe'
+      NOT_CRAN: true
       R_KEEP_PKG_SOURCE: yes
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: false
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
+          rtools-version: ${{ matrix.config.rtools }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
 
       - uses: r-lib/actions/setup-pandoc@v2
 
-      - name: Query dependencies
-        run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
-        shell: Rscript {0}
-
-      - name: Cache R packages
-        if: runner.os != 'Windows'
-        uses: actions/cache@v3
-        with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
-
-      - name: Install system dependencies (ubuntu)
-        if: runner.os == 'Linux'
-        run: |
-          while read -r cmd
-          do
-            eval sudo $cmd
-          done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")')
-      - name: Install jags (windows-latest) - most windows system dependencies
+      - name: Install most Windows system dependencies
         if: runner.os == 'Windows'
         run: |
           pacman -Syu mingw-w64-x86_64-make --noconfirm
@@ -67,38 +49,27 @@ jobs:
           Get-Command mingw32-make | Select-Object -ExpandProperty Definition
           (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.0.exe', 'C:\JAGS-4.3.0.exe')
         shell: powershell
-        
-      - name: Install JAGS on (windows-latest)
+
+      - name: Install JAGS on Windows
         if: runner.os == 'Windows'
         run: C:\JAGS-4.3.0.exe /S
         shell: cmd
 
-      - name: Install jags (macOS-latest)
+      - name: Install Mac system dependencies
         if: runner.os == 'macOS'
-        run : |
-              brew install jags
-              
-      - name: Install JAGS (ubuntu-latest)
-        if: runner.os == 'ubuntu'
-        run: |
-          sudo apt-get update -y
-          sudo apt-get install -y jags
-          
-      - name: Install dependencies
+        run: brew install jags
+
+      - name: Install Linux system dependencies
+        if: runner.os == 'Linux'
         run: |
-          remotes::install_deps(dependencies = TRUE)
-          remotes::install_cran("rcmdcheck")
-        shell: Rscript {0}
+          sudo apt-get update
+          sudo apt-get install libglpk-dev libglpk40 jags libv8-dev libnode-dev libcurl4-openssl-dev
 
-      - name: Check
-        env:
-          _R_CHECK_CRAN_INCOMING_REMOTE_: false
-        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
-        shell: Rscript {0}
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
 
-      - name: Upload check results
-        if: failure()
-        uses: actions/upload-artifact@main
+      - uses: r-lib/actions/check-r-package@v2
         with:
-          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
-          path: check
+          upload-snapshots: true