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forked from nimezhu/bam2x

extract information from bam (sequence alignment) files and generate tables for further analysis.

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bam2x

bam2x provides a nice command line interface for analyzing NGS data.

Library Dependencies:

  • pysam
  • twobitreader (needed for querying 2bit files)
  • bxpython (optional, needed for querying bigwig files)
  • bitarray
  • numpy

Optional Dependency:

  • matplotlib

bam2x branch is a working branch master branch is release branch xplib branch contains old scripts

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extract information from bam (sequence alignment) files and generate tables for further analysis.

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  • Python 100.0%