This repository contains data and code for the manuscript, Dominance of plasticity in wind-pollinated trees’ flowering time response to temperature, by Yi Liu, Yiluan Song, William Weaver, Kerby Shedden, Yang Chen, Stephen Smith, Kai Zhu. Yi Liu curated and analyzed the data using the code provided in the repository.

Directory Structure

vignette/ – contains three Quarto (.qmd) files:

Herbarium_easy.qmd – a simplified demonstration (with only 8 images) of downloading GBIF images and processing them with leafmachine2.

Analysis.qmd – the full pipeline for the main analysis. The “Prepare data” section can be skipped, as all required files are already included in the data/ directory.

Figures.qmd – workflow for generating all manuscript figures.

scripts/ – contains all detailed code called within the .qmd files.

data/ – contains all raw and processed data. Can be downloaded from Zenodo.