fix: add gzi and fai

3d-omics · Nov 12, 2024 · 3e647f3 · 3e647f3
1 parent db7974b
commit 3e647f3
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/workflow/rules/variants/call.smk b/workflow/rules/variants/call.smk
@@ -58,6 +58,8 @@ rule variants__call__combine_gvcfs:
         vcf_gzs=get_files_to_genotype,
         reference=REFERENCE / "genome.fa.gz",
         dict_=REFERENCE / "genome.dict",
+        fai=REFERENCE / "genome.fa.gz.fai",
+        gzi=REFERENCE / "genome.fa.gz.gzi",
     output:
         vcf_gz=CALL / "{region}.vcf.gz",
     log: