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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 344 150

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 22 14

Repositories

Showing 10 of 397 repositories
  • pigeon Public

    A STOMP client with message definitions via Pydantic

    AllenInstitute/pigeon’s past year of commit activity
    Python 0 BSD-3-Clause 1 1 0 Updated Nov 9, 2024
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 3 BSD-3-Clause 1 41 5 Updated Nov 9, 2024
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 8, 2024
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access’s past year of commit activity
    Jupyter Notebook 50 21 12 5 Updated Nov 8, 2024
  • scrattch.mapping Public

    Genearlized mapping scripts for RNA-seq and Patch-seq data

    AllenInstitute/scrattch.mapping’s past year of commit activity
    R 10 2 8 0 Updated Nov 8, 2024
  • npc_mvr Public

    Tools for reading raw video data from MindScope Neuropixels experiments, compatible with data in the cloud.

    AllenInstitute/npc_mvr’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 8, 2024
  • acq4 Public Forked from acq4/acq4

    Data acquisition for patch clamp ephys / optogenetics / imaging experiments

    AllenInstitute/acq4’s past year of commit activity
    Python 0 MIT 49 0 0 Updated Nov 7, 2024
  • axonal_connectomics Public

    Repository for tools developed for axonal connectomics

    AllenInstitute/axonal_connectomics’s past year of commit activity
    Jupyter Notebook 2 1 3 0 Updated Nov 7, 2024
  • txtox Public

    Experiments to relate gene expression and anatomical location

    AllenInstitute/txtox’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 7, 2024
  • TEM_comms Public

    Pigeon messages for the next generation TEM imaging system

    AllenInstitute/TEM_comms’s past year of commit activity
    Python 0 BSD-3-Clause 1 1 0 Updated Nov 7, 2024
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