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    • MIES

      Public
      Multichannel Igor Electrophysiology Suite
      IGOR Pro
      92827216Updated Aug 1, 2025Aug 1, 2025
    • Tools for accessing, processing and presenting data from Dynamic Routing experiments.
      Jupyter Notebook
      0200Updated Aug 1, 2025Aug 1, 2025
    • vis

      Public
      Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats
      TypeScript
      15116Updated Aug 1, 2025Aug 1, 2025
    • MICrONS databook and analysis tutorials
      HTML
      2310Updated Aug 1, 2025Aug 1, 2025
    • SCSS
      0000Updated Aug 1, 2025Aug 1, 2025
    • An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
      TypeScript
      312672Updated Aug 1, 2025Aug 1, 2025
    • CDS-metadata-schemas

      Public template
      Repository for metadata schemas as used by the Community Data Standards Team
      HTML
      0001Updated Aug 1, 2025Aug 1, 2025
    • IPNWB

      Public
      IGOR Pro
      0162Updated Aug 1, 2025Aug 1, 2025
    • pytic

      Public
      PyTic - An Object-Oriented Python Wrapper for Pololu Tic Stepper Drivers
      Python
      71172Updated Aug 1, 2025Aug 1, 2025
    • Jupyter Notebook
      9420Updated Aug 1, 2025Aug 1, 2025
    • Repository for storing prototype functionality implementations for the BKP
      Python
      53152Updated Jul 31, 2025Jul 31, 2025
    • Gene ID mapper/ortholog finder for MapMyCells
      Python
      0000Updated Jul 31, 2025Jul 31, 2025
    • A Python package that corrects split mistakes in a fragmented neuron segmentation using a graph neural network.
      Python
      0600Updated Jul 31, 2025Jul 31, 2025
    • Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.
      Python
      12530Updated Jul 31, 2025Jul 31, 2025
    • GRNN

      Public
      Python
      0000Updated Jul 31, 2025Jul 31, 2025
    • Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
      Jupyter Notebook
      2879187Updated Jul 30, 2025Jul 30, 2025
    • ac_hpc

      Public
      This is a repository for all hpc processing files related to the axonal connectomics segmentation/skeletonization pipeline.
      0000Updated Jul 30, 2025Jul 30, 2025
    • Bayesian detection of lamination and structures from labeled spatial points
      Python
      0100Updated Jul 30, 2025Jul 30, 2025
    • Core library to be used as foundation across multiple projects
      Python
      0201Updated Jul 29, 2025Jul 29, 2025
    • GitHub starting page for the MapMySections data challenge
      Jupyter Notebook
      1100Updated Jul 29, 2025Jul 29, 2025
    • npc_mvr

      Public
      Tools for reading raw video data from MindScope Neuropixels experiments, compatible with data in the cloud.
      Python
      0000Updated Jul 29, 2025Jul 29, 2025
    • npc_sync

      Public
      Repackaging of AllenSDK.SyncDataset with extra functionality, compatible with data in the cloud.
      Python
      0000Updated Jul 29, 2025Jul 29, 2025
    • ipfx

      Public
      computes intrinsic cell features from intracellular electrophysiology data
      Python
      3827586Updated Jul 29, 2025Jul 29, 2025
    • npc_stim

      Public
      Tools for accessing and processing stim data, compatible with data in the cloud.
      Python
      0000Updated Jul 29, 2025Jul 29, 2025
    • Code base generating formatted data tables that streamlines data analysis process for ephys production metadata.
      Python
      0000Updated Jul 28, 2025Jul 28, 2025
    • jem

      Public
      Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.
      HTML
      3400Updated Jul 28, 2025Jul 28, 2025
    • Tools for processing stim data from Sam's DynamicRoutingTask, compatible with data in the cloud.
      Python
      0000Updated Jul 28, 2025Jul 28, 2025
    • ACE

      Public
      R Shiny app for comparison of annotations (e.g., cell type assignments)
      R
      13130Updated Jul 28, 2025Jul 28, 2025
    • improved clustering pipeline for transcriptomic data
      Python
      24176Updated Jul 24, 2025Jul 24, 2025
    • Repository for tools developed for axonal connectomics
      Jupyter Notebook
      1232Updated Jul 24, 2025Jul 24, 2025