Skip to content

@AllenInstitute Allen Institute

Change the repository type filter

All

    Repositories list

    435 repositories

    • MIES

      Public
      Multichannel Igor Electrophysiology Suite
      electrophysiologyigor-prosupported
      IGOR Pro
      •
      Other
      •9•28•267•11•Updated Aug 6, 2025Aug 6, 2025

    • deep-neurographs

      Public
      A Python package that corrects split mistakes in a fragmented neuron segmentation using a graph neural network.
      Python
      •
      MIT License
      •0•6•0•0•Updated Aug 5, 2025Aug 5, 2025

    • spatial-factorization-hmba

      Public
      Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.
      Python
      •
      GNU Lesser General Public License v3.0
      •4•0•0•0•Updated Aug 5, 2025Aug 5, 2025

    • np_queuey

      Public
      Tools for submitting and processing jobs through a message queue for Mindscope Neuropixels workflows.
      Python
      •1•0•0•1•Updated Aug 5, 2025Aug 5, 2025

    • biofile-finder

      Public
      An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •3•12•68•2•Updated Aug 5, 2025Aug 5, 2025

    • mmc_gene_mapper

      Public
      Gene ID mapper/ortholog finder for MapMyCells
      Python
      •
      Other
      •0•0•0•0•Updated Aug 5, 2025Aug 5, 2025

    • cell_type_mapper

      Public
      Repository for storing prototype functionality implementations for the BKP
      Python
      •
      Other
      •7•31•5•2•Updated Aug 4, 2025Aug 4, 2025

    • patchseq_autotrace

      Public
      Execution of patchseq slice autotrace pipeline
      Python
      •0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

    • IPNWB

      Public
      IGOR Pro
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•6•1•Updated Aug 4, 2025Aug 4, 2025

    • vis

      Public
      Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats
      visualizationwebglbig-datatoolkit
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•5•11•6•Updated Aug 4, 2025Aug 4, 2025

    • dynamic_routing_analysis

      Public
      Tools for accessing, processing and presenting data from Dynamic Routing experiments.
      Jupyter Notebook
      •0•2•0•0•Updated Aug 1, 2025Aug 1, 2025

    • microns_tutorial

      Public
      MICrONS databook and analysis tutorials
      HTML
      •2•4•1•0•Updated Aug 1, 2025Aug 1, 2025

    • HMBA_BasalGanglia_Consensus_Taxonomy

      Public
      SCSS
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • CDS-metadata-schemas

      Public template
      Repository for metadata schemas as used by the Community Data Standards Team
      HTML
      •
      MIT License
      •0•0•0•1•Updated Aug 1, 2025Aug 1, 2025

    • pytic

      Public
      PyTic - An Object-Oriented Python Wrapper for Pololu Tic Stepper Drivers
      Python
      •
      Other
      •7•11•7•2•Updated Aug 1, 2025Aug 1, 2025

    • bmtk-workshop

      Public
      Jupyter Notebook
      •9•4•2•0•Updated Aug 1, 2025Aug 1, 2025

    • npc_sessions

      Public
      Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.
      Python
      •1•2•53•0•Updated Jul 31, 2025Jul 31, 2025

    • GRNN

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jul 31, 2025Jul 31, 2025

    • abc_atlas_access

      Public
      Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
      Jupyter Notebook
      •
      Other
      •28•79•18•7•Updated Jul 30, 2025Jul 30, 2025

    • ac_hpc

      Public
      This is a repository for all hpc processing files related to the axonal connectomics segmentation/skeletonization pipeline.
      0•0•0•0•Updated Jul 30, 2025Jul 30, 2025

    • lamination_station

      Public
      Bayesian detection of lamination and structures from labeled spatial points
      Python
      •0•1•0•0•Updated Jul 30, 2025Jul 30, 2025

    • aibs-informatics-core

      Public
      Core library to be used as foundation across multiple projects
      aibs-informatics
      Python
      •
      Other
      •0•2•0•1•Updated Jul 29, 2025Jul 29, 2025

    • MapMySections

      Public
      GitHub starting page for the MapMySections data challenge
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •1•1•0•0•Updated Jul 29, 2025Jul 29, 2025

    • npc_mvr

      Public
      Tools for reading raw video data from MindScope Neuropixels experiments, compatible with data in the cloud.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 29, 2025Jul 29, 2025

    • npc_sync

      Public
      Repackaging of AllenSDK.SyncDataset with extra functionality, compatible with data in the cloud.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 29, 2025Jul 29, 2025

    • ipfx

      Public
      computes intrinsic cell features from intracellular electrophysiology data
      Python
      •
      Other
      •38•27•58•6•Updated Jul 29, 2025Jul 29, 2025

    • npc_stim

      Public
      Tools for accessing and processing stim data, compatible with data in the cloud.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 29, 2025Jul 29, 2025

    • ephys-analysis-tools

      Public
      Code base generating formatted data tables that streamlines data analysis process for ephys production metadata.
      Python
      •0•0•0•0•Updated Jul 28, 2025Jul 28, 2025

    • jem

      Public
      Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.
      HTML
      •
      Other
      •3•4•0•0•Updated Jul 28, 2025Jul 28, 2025

    • npc_samstim

      Public
      Tools for processing stim data from Sam's DynamicRoutingTask, compatible with data in the cloud.
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 28, 2025Jul 28, 2025