update swc write

src/neuron_proofreader/split_proofreading/split_feature_extraction.py

@@ -402,7 +402,7 @@ def __init__(
         node1, node2 = tuple(self.proposal)
         self.annotate_edge(node1)
         self.annotate_edge(node2)
-        self.annotate_proposal()
+        self.annotate_proposal()        
 
     # --- Core Routines ---
     def get_input_patch(self):

src/neuron_proofreader/split_proofreading/split_inference.py

@@ -284,10 +284,7 @@ def save_results(self):
         self.dataset.graph.to_zipped_swcs(temp_dir, sampling_rate=2)
 
         # Merge ZIPs
-        swc_dir = os.path.join(self.output_dir, "corrected-swcs")
-        swc_path = os.path.join(swc_dir, "corrected-swcs.zip")
-        util.mkdir(swc_dir)
-
+        swc_path = os.path.join(self.output_dir, "corrected-swcs.zip")
         zip_paths = util.list_paths(temp_dir, extension=".zip")
         util.combine_zips(zip_paths, swc_path)
         util.rmdir(temp_dir)

src/neuron_proofreader/utils/img_util.py

@@ -774,7 +774,7 @@ def to_physical(voxel, anisotropy, offset=(0, 0, 0)):
     return tuple([voxel[i] * anisotropy[i] - offset[i] for i in range(3)])
 
 
-def to_voxels(xyz, anisotropy, multiscale=0):
+def to_voxels(xyz, anisotropy):
     """
     Converts coordinate from a physical to voxel space.
 
@@ -785,15 +785,11 @@ def to_voxels(xyz, anisotropy, multiscale=0):
     anisotropy : ArrayLike
         Image to physical coordinates scaling factors to account for the
         anisotropy of the microscope.
-    multiscale : int, optional
-        Level in the image pyramid that the voxel coordinate must index into.
-        Default is 0.
 
     Returns
     -------
     Tuple[int]
         Voxel coordinate.
     """
-    scaling_factor = 1.0 / 2 ** multiscale
-    voxel = [int(scaling_factor * xyz[i] / anisotropy[i]) for i in range(3)]
+    voxel = [int(xyz[i] / anisotropy[i]) for i in range(3)]
     return tuple(voxel[::-1])