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31 Open 183 Closed
31 Open 183 Closed
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Issues list

Auto detect if imwrite should use ome and bigtiff or not
#275 opened Dec 13, 2024 by matt-sd-watson
Docker container keeps exiting
#274 opened Dec 11, 2024 by SamWell16
Set mask dtype to np.uint32 by default without using ENV variables?
#272 opened Nov 20, 2024 by matt-sd-watson
3
Command "preprocess imc images" generate tiff file with only image for one channel
#271 opened Nov 15, 2024 by xwxdazhong
1
Strange invalid literal error.. bug Something isn't working
#259 opened May 9, 2024 by paulrbuckley-kcl
2
[Bug]No neighborhood Data in h5ad-files? duplicate This issue or pull request already exists
#210 opened Aug 9, 2023 by albert180
1
tissuenet model support and documentation documentation Improvements or additions to documentation
#208 opened Aug 3, 2023 by lassedochreden
Maximum amount of segmented cells bounded from segmentation output file format (16-bit unsigned integer TIFF images) documentation Improvements or additions to documentation
#207 opened Aug 2, 2023 by asom
3
Using the preprocess external option with large images bug Something isn't working
#206 opened Jul 17, 2023 by mjseignon
6
cytomarker panels enhancement New feature or request
#205 opened Jul 11, 2023 by jwindhager
Add option to remove the first acquisition row in IMC images. enhancement New feature or request
#204 opened Jul 11, 2023 by nathansteenbuck
1
--strict/--no-strict for steinbock preprocess imc images command enhancement New feature or request
#202 opened Jun 30, 2023 by jwindhager
TypeError - code that used to work
#201 opened Jun 28, 2023 by paulrbuckley-kcl
Add a --channels-last option to steinbock preprocess external enhancement New feature or request
#199 opened Jun 21, 2023 by jwindhager
Obfuscated logging in external preprocessing bug Something isn't working
#198 opened Jun 20, 2023 by jwindhager
ome-tiff issue
#197 opened Jun 20, 2023 by paulrbuckley-kcl
3
Concatenated anndata export does not retain neighborhood information bug Something isn't working
#196 opened Jun 16, 2023 by jwindhager
Error when running steinbock classify ilastik run
#195 opened Jun 12, 2023 by nilseling
4
Segmentation fault in python package
#192 opened May 27, 2023 by ynanli
6
Update the CellProfiler pipeline for pixel classification based segmentation
#191 opened May 25, 2023 by nilseling
5
Enable memory mapping by default enhancement New feature or request
#171 opened Feb 16, 2023 by jwindhager
Add steinbock export zarr command enhancement New feature or request
#170 opened Feb 16, 2023 by jwindhager
Potentially introduce steinbock preprocess ome/zarr panel/images commands enhancement New feature or request
#169 opened Feb 16, 2023 by jwindhager
Implement mosaic overlap for segmentation enhancement New feature or request good first issue Good for newcomers
#161 opened Jan 13, 2023 by jwindhager
Document & test use with singularity documentation Improvements or additions to documentation good first issue Good for newcomers
#159 opened Jan 13, 2023 by jwindhager
7
ProTip! no:milestone will show everything without a milestone.