Skip to content

Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis

License

Notifications You must be signed in to change notification settings

CAST-genomics/haptools

Repository files navigation

haptools

pypi version image license status

Haptools is a collection of tools for simulating and analyzing genotypes and phenotypes while taking into account haplotype information. Haptools supports fast simulation of admixed genomes (with simgenotype), visualization of admixture tracks (with karyogram), simulating haplotype- and local ancestry-specific phenotype effects (with transform and simphenotype), and computing a variety of common file operations and statistics in a haplotype-aware manner.

Homepage: https://haptools.readthedocs.io/

Visit our homepage for installation and usage instructions.

haptools commands

citation

There is an option to "Cite this repository" on the right sidebar of the repository homepage

Arya R Massarat, Michael Lamkin, Ciara Reeve, Amy L Williams, Matteo D’Antonio, Melissa Gymrek, Haptools: a toolkit for admixture and haplotype analysis, Bioinformatics, 2023;, btad104, https://doi.org/10.1093/bioinformatics/btad104

About

Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis

Topics

Resources

License

Stars

Watchers

Forks

Packages

No packages published

Languages