Releases: CDCgov/datasets-sars-cov-2
Releases · CDCgov/datasets-sars-cov-2
v0.7.2
- Parallelized the CI testing
- More fixing on the hashsums
- Will try three times to download a nucleotide accession in case it comes as zero byte
v0.7.1
- Fixing some hashsums
- Added
make clean
v0.7
Bumping this version to help address some reviewer comments
v0.6.3
Addressed the issue that bbtools did not validate some reads in the nonvoi/voic dataset.
v0.6.2
New:
- Took advice from @BioWilko to fix truncated reads by not using the --gzip option on fastq-dump in #13
- Hashsums changed as a result for all datasets
- Hashsums varied with gzip metadata and so we had to check hashsums on uncompressed reads
- Hashsums have been recalculated accordingly
- Unit testing filled up the available space for one dataset and so unit testing has been altered to chunk 20 at a time
- new option available
--compressed
v0.5.3
- Updated accessions for Coronahit datasets per #10
- Corrected some hashsums
- GitHub Actions minor modifications
- Better logging on
t/01_download.bats
- Running full test only on new versions to save on GitHub Actions minutes
- Running sample test only for all
git push
events
v0.4
New dataset QC fails (the sixth dataset!)
v0.3
Five SARS-CoV-2 datasets!