Downstream analysis

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Yuanlong LIU edited this page Jan 1, 2024 · 2 revisions

HaploC tools provide downstream analysis modules including

differences in insulation between two haplotype-specific Hi-C maps diffIns
differences in chromatin compartment organisation between the two two haplotype-specific Hi-C maps diffComp
copy number status (CN) at both diploid and haploid level HaploCNV
phase sequencing reads generated for the same individual using from any other platform phasingBam
generate phased Hi-C maps from a new Hi-C dataset phasingNewHiC

Follow the link of each module to learn details on how to conduct the respective analyses