Run HaploC tools without slurm

Hi-C data processing is typically computationally intensive. HaploC-tools is mainly designed to be run on a cluster using multiple CPU cores, but it can also be run in an interactive mode without using job scheduler. We provide a one line command to run the full HaploC and downstream analysis

Example usage on a small demo dataset with default settings

HaploC-tools/bin/haploc_cpu.sh -d /absolute/path/to/demo_data

Next steps

• Downstream-analysis