Merge pull request #7 from Melii99/patch-2

Update 05-control_calidad.R
ComunidadBioInfo · Sep 22, 2023 · 8d44f0a · 8d44f0a
2 parents 7d2f15d + 46c4ea1
commit 8d44f0a
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/05-control_calidad.R b/05-control_calidad.R
@@ -322,12 +322,12 @@ col = "grey80"
 ## ----pbmc_chrMT_ayuda-------------------------------------------------------------------------------
 sce.pbmc <- sce.pbmc[, which(e.out$FDR <= 0.001)]
 is.mito <- grep("^MT-", rowData(sce.pbmc)$Symbol)
-sce.pmbc <- addPerCellQC(sce.pbmc, subsets = list(MT = is.mito))
+sce.pbmc <- addPerCellQC(sce.pbmc, subsets = list(MT = is.mito))
 discard.mito <-
-    isOutlier(sce.pmbc$subsets_MT_percent, type = "higher")
+    isOutlier(sce.pbmc$subsets_MT_percent, type = "higher")
 plot(
-    sce.pmbc$sum,
-    sce.pmbc$subsets_MT_percent,
+    sce.pbmc$sum,
+    sce.pbmc$subsets_MT_percent,
     log = "x",
     xlab = "Total count",
     ylab = "Mitochondrial %"