small fix to differential and regionpositional

DeplanckeLab · May 23, 2024 · c9795d6 · c9795d6
1 parent f1e696d
commit c9795d6
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/src/chromatinhd/models/diff/interpret/regionpositional.py b/src/chromatinhd/models/diff/interpret/regionpositional.py
@@ -370,7 +370,7 @@ def get_plotdata(self, region: str, clusters=None, relative_to=None) -> (pd.Data
     def scored(self):
         return len(self.probs) > 0
 
-    def calculate_slices(self, prob_cutoff=0.0, clusters_oi=None, cluster_grouping=None, step=1):
+    def calculate_slices(self, prob_cutoff=1.5, clusters_oi=None, cluster_grouping=None, step=1):
         start_position_ixs = []
         end_position_ixs = []
         data = []
@@ -530,7 +530,7 @@ def calculate_top_slices(self, slices, fc_cutoff=2.0):
         )
         return differential_slices
 
-    def select_windows(self, region_id, max_merge_distance=500, min_length=50, padding=500, prob_cutoff=0.5):
+    def select_windows(self, region_id, max_merge_distance=500, min_length=50, padding=500, prob_cutoff=1.5):
         """
         Select windows based on the number of fragments
 

diff --git a/src/chromatinhd/models/diff/plot/differential.py b/src/chromatinhd/models/diff/plot/differential.py
@@ -372,7 +372,7 @@ def _draw_differential(ax, plotdata_cluster, plotdata_mean, cmap_atac_diff, norm
 
 
 def _scale_differential(ax, ymax):
-    ax.set_yscale("symlog", linthresh=5)
+    ax.set_yscale("symlog", linthresh=25)
     ax.set_ylim(0, ymax)