Adjust the README file

README.md

@@ -6,44 +6,8 @@
 
 Set of tools which allows you to fetch RAW read and assembly files from the European Nucleotide Archive (ENA).
 
-## How to set up your development environment
-
-We recommend you to use [miniconda|conda](https://docs.conda.io/en/latest/miniconda.html) to manage the environment.
-
-Clone the repo and install the requirements.
-
-```
-$ git clone git@github.com:EBI-Metagenomics/fetch_tool.git
-$ cd fetch_tool
-$ # activate anv (conda activate xxx)
-$ pip install -r requirements-dev.txt
-```
-
-### Pre-commit hooks
-
-Setup the git [pre-commit hook](https://pre-commit.com/):
-
-```bash
-pre-commit install
-```
-
-*Why?*
-
-pre-commit will run a set of pre-configured tools before allowing you to commit files. You can find the currently configure hooks and configurations in [.pre-commit-config.yaml](./.pre-commit-config.yaml)
-
-### Tests
-
-This repo uses [pytest](https://docs.pytest.org).
-
 ## Install fetch tool
 
-### Using Conda
-
-```bash
-$ conda create -q -n fetch_tool python=3.10
-$ conda activate fetch_tool
-```
-
 Install from Pypi
 
 ```bash
@@ -145,3 +109,32 @@ Download assembly study:
 ```bash
 $ fetch-assembly-tool -p ERP111288 -v -d /home/<user>/temp/
 ```
+
+# How to set up your development environment
+
+We recommend you to use [miniconda|conda](https://docs.conda.io/en/latest/miniconda.html) to manage the environment.
+
+Clone the repo and install the requirements.
+
+```
+$ git clone git@github.com:EBI-Metagenomics/fetch_tool.git
+$ cd fetch_tool
+$ # activate anv (conda activate xxx)
+$ pip install .[dev]
+```
+
+## Pre-commit hooks
+
+Setup the git [pre-commit hook](https://pre-commit.com/):
+
+```bash
+pre-commit install
+```
+
+*Why?*
+
+pre-commit will run a set of pre-configured tools before allowing you to commit files. You can find the currently configure hooks and configurations in [.pre-commit-config.yaml](./.pre-commit-config.yaml)
+
+## Tests
+
+This repo uses [pytest](https://docs.pytest.org).