Updates cicd + Raman Reader

.github/workflows/pylint.yml

@@ -11,17 +11,15 @@ jobs:
         uses: actions/setup-python@v2
         with:
           python-version: "3.10"
-      - name: Install dependencies
+      - name: Install uv
         run: |
-          git submodule sync --recursive
-          git submodule update --init --recursive --jobs=4
-          python -m pip install --upgrade pip
+          curl -LsSf https://astral.sh/uv/install.sh | sh
       - name: Install package
         run: |
-          python -m pip install --no-deps .
-      - name: Install requirements
+          uv pip install --system --no-deps .
+      - name: Install dev requirements
         run: |
-          python -m pip install -r dev-requirements.txt
+          uv pip install --system -r dev-requirements.txt
       - name: ruff
         run: |
           ruff pynxtools_raman tests

.github/workflows/pytest.yml

@@ -1,3 +1,6 @@
+# This workflow will install Python dependencies, run tests and lint with a single version of Python
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
 name: pytest
 
 on:
@@ -25,10 +28,11 @@ jobs:
           python-version: ${{ matrix.python_version }}
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
+          curl -LsSf https://astral.sh/uv/install.sh | sh
+          uv pip install --system coverage coveralls
       - name: Install package
         run: |
-          pip install ".[dev]"
+          uv pip install --system ".[dev]"
       - name: Test with pytest
         run: |
-          pytest tests
+          pytest -sv --show-capture=no tests

dev-requirements.txt

@@ -0,0 +1,126 @@
+# This file was autogenerated by uv via the following command:
+#    uv pip compile --extra dev pyproject.toml --output-file dev-requirements.txt
+anytree==2.12.1
+    # via pynxtools
+ase==3.23.0
+    # via pynxtools
+build==1.2.1
+    # via pip-tools
+cfgv==3.4.0
+    # via pre-commit
+click==8.1.7
+    # via
+    #   click-default-group
+    #   pip-tools
+    #   pynxtools
+click-default-group==1.2.4
+    # via pynxtools
+contourpy==1.2.1
+    # via matplotlib
+cycler==0.12.1
+    # via matplotlib
+distlib==0.3.8
+    # via virtualenv
+exceptiongroup==1.2.1
+    # via pytest
+filelock==3.15.4
+    # via virtualenv
+fonttools==4.53.0
+    # via matplotlib
+h5py==3.11.0
+    # via pynxtools
+identify==2.5.36
+    # via pre-commit
+importlib-metadata==8.0.0
+    # via pynxtools
+iniconfig==2.0.0
+    # via pytest
+kiwisolver==1.4.5
+    # via matplotlib
+lxml==5.2.2
+    # via pynxtools
+matplotlib==3.9.0
+    # via ase
+mergedeep==1.3.4
+    # via pynxtools
+mypy==1.10.1
+mypy-extensions==1.0.0
+    # via mypy
+nodeenv==1.9.1
+    # via pre-commit
+numpy==2.0.0
+    # via
+    #   ase
+    #   contourpy
+    #   h5py
+    #   matplotlib
+    #   pandas
+    #   pynxtools
+    #   scipy
+    #   xarray
+packaging==24.1
+    # via
+    #   build
+    #   matplotlib
+    #   pytest
+    #   xarray
+pandas==2.2.2
+    # via
+    #   pynxtools
+    #   xarray
+pillow==10.4.0
+    # via matplotlib
+pip==24.1.1
+    # via pip-tools
+pip-tools==7.4.1
+platformdirs==4.2.2
+    # via virtualenv
+pluggy==1.5.0
+    # via pytest
+pre-commit==3.7.1
+pynxtools==0.3.2
+pyparsing==3.1.2
+    # via matplotlib
+pyproject-hooks==1.1.0
+    # via
+    #   build
+    #   pip-tools
+pytest==8.2.2
+python-dateutil==2.9.0.post0
+    # via
+    #   matplotlib
+    #   pandas
+pytz==2024.1
+    # via pandas
+pyyaml==6.0.1
+    # via
+    #   pre-commit
+    #   pynxtools
+ruff==0.3.4
+scipy==1.14.0
+    # via ase
+setuptools==70.2.0
+    # via pip-tools
+six==1.16.0
+    # via
+    #   anytree
+    #   python-dateutil
+tomli==2.0.1
+    # via
+    #   build
+    #   mypy
+    #   pip-tools
+    #   pytest
+types-pyyaml==6.0.12.20240311
+typing-extensions==4.12.2
+    # via mypy
+tzdata==2024.1
+    # via pandas
+virtualenv==20.26.3
+    # via pre-commit
+wheel==0.43.0
+    # via pip-tools
+xarray==2024.6.0
+    # via pynxtools
+zipp==3.19.2
+    # via importlib-metadata

pynxtools_raman/reader.py

@@ -2,6 +2,7 @@
 
 from pynxtools.dataconverter.readers.base.reader import BaseReader
 
+
 class RamanReader(BaseReader):
     """
     Reader for my method....

tests/test_reader.py

@@ -1,6 +1,7 @@
 """
 Basic example based test for the stm reader
 """
+
 import os
 import xml.etree.ElementTree as ET
 from glob import glob
@@ -10,7 +11,8 @@
     validate_data_dict,
 )
 from pynxtools.dataconverter.template import Template
-from pynxtools.nexus.nxdl_utils import get_nexus_definitions_path
+from pynxtools.definitions.dev_tools.utils.nxdl_utils import get_nexus_definitions_path
+
 from pynxtools_raman.reader import RamanReader
 
 
@@ -40,4 +42,4 @@ def test_example_data():
         )
 
         assert isinstance(read_data, Template)
-        assert validate_data_dict(template, read_data, root)
+        assert validate_data_dict(template, read_data, root)