Merge pull request #1733 from FlyBase/fru

linking AL PN and fru neuron terms

src/ontology/neuron_symbols.tsv

@@ -1487,7 +1487,10 @@ FeCO	FBbt:00048051	FlyBase:FBrf0240598
 FR1	FBbt:00051235	FlyBase:FBrf0246888
 FR2	FBbt:00051236	FlyBase:FBrf0246888
 fru-aDT-a	FBbt:00110415	FlyBase:FBrf0211926
+fru-aDT-b	FBbt:00052693	FlyBase:FBrf0211926
 fru-aDT-c	FBbt:00110419	FlyBase:FBrf0211926
+fru-aDT-d	FBbt:00052694	FlyBase:FBrf0211926
+fru-aDT-e	FBbt:00052692	FlyBase:FBrf0211926
 fru-aDT-f	FBbt:00110425	FlyBase:FBrf0211926
 fru-aDT-g	FBbt:00110427	FlyBase:FBrf0211926
 fru-aDT-h	FBbt:00110429	FlyBase:FBrf0211926
@@ -1496,8 +1499,12 @@ fru-aDT4	FBbt:00110539	FlyBase:FBrf0211884
 fru-aDT7	FBbt:00110541	FlyBase:FBrf0211884
 fru-aDT8	FBbt:00110543	FlyBase:FBrf0211884
 fru-aIP-a	FBbt:00110431	FlyBase:FBrf0211926
+fru-aIP-b	FBbt:00052695	FlyBase:FBrf0211926
 fru-aIP-c	FBbt:00052691	FlyBase:FBrf0211926
+fru-aIP-d	FBbt:00052696	FlyBase:FBrf0211926
+fru-aIP-e	FBbt:00052697	FlyBase:FBrf0211926
 fru-aIP-f	FBbt:00110441	FlyBase:FBrf0211926
+fru-aIP-g	FBbt:00052698	FlyBase:FBrf0211926
 fru-aIP-h	FBbt:00110445	FlyBase:FBrf0211926
 fru-aIP-i	FBbt:00110573	FlyBase:FBrf0211926
 fru-aIP2	FBbt:00110545	FlyBase:FBrf0211884
@@ -1513,16 +1520,22 @@ fru-aSG5	FBbt:00111156	FlyBase:FBrf0211884
 fru-aSG6	FBbt:00111182	FlyBase:FBrf0211884
 fru-aSG7	FBbt:00111146	FlyBase:FBrf0212984
 fru-aSG8	FBbt:00111147	FlyBase:FBrf0212984
+fru-aSP-a	FBbt:00052699	FlyBase:FBrf0211926
+fru-aSP-b	FBbt:00052700	FlyBase:FBrf0211926
 fru-aSP-c	FBbt:00110453	FlyBase:FBrf0211926
 fru-aSP-d	FBbt:00110455	FlyBase:FBrf0211926
 fru-aSP-e	FBbt:00110457	FlyBase:FBrf0211926
 fru-aSP-f	FBbt:00051305	FlyBase:FBrf0211926
 fru-aSP-g	FBbt:00049909	FlyBase:FBrf0211926
+fru-aSP-h	FBbt:00052701	FlyBase:FBrf0211926
+fru-aSP-i	FBbt:00052702	FlyBase:FBrf0211926
 fru-aSP-j	FBbt:00110467	FlyBase:FBrf0211926
+fru-aSP-k	FBbt:00052703	FlyBase:FBrf0211926
 fru-aSP-l	FBbt:00110471	FlyBase:FBrf0211926
 fru-aSP-m	FBbt:00110473	FlyBase:FBrf0211926
 fru-aSP10	FBbt:00111194	FlyBase:FBrf0211884
 fru-aSP3	FBbt:00110553	FlyBase:FBrf0211884
+fru-aSP4	FBbt:00052704	FlyBase:FBrf0211884
 fru-dAB1	FBbt:00111087	FlyBase:FBrf0211884
 fru-dAB2	FBbt:00111089	FlyBase:FBrf0211884
 fru-dAB3	FBbt:00111091	FlyBase:FBrf0211884
@@ -1539,18 +1552,26 @@ fru-M	FBbt:00110477	FlyBase:FBrf0211884
 fru-MB	FBbt:00110575	FlyBase:FBrf0211884
 fru-mSG	FBbt:00047221	FlyBase:FBrf0224741
 fru-P1	FBbt:00110621	FlyBase:FBrf0205974
+fru-pIP-a	FBbt:00052705	FlyBase:FBrf0211926
 fru-pIP-b	FBbt:00110481	FlyBase:FBrf0211926
 fru-pIP-c	FBbt:00110483	FlyBase:FBrf0211926
 fru-pIP-d	FBbt:00110485	FlyBase:FBrf0211926
+fru-pIP-e	FBbt:00052706	FlyBase:FBrf0211926
 fru-pIP-f	FBbt:00110489	FlyBase:FBrf0211926
 fru-pIP-g	FBbt:00110491	FlyBase:FBrf0211926
+fru-pIP-h	FBbt:00052715	FlyBase:FBrf0211926
 fru-pIP-i	FBbt:00110495	FlyBase:FBrf0211926
 fru-pIP-j	FBbt:00110497	FlyBase:FBrf0211926
 fru-pIP2	FBbt:00110551	FlyBase:FBrf0211884
 fru-pIP3	FBbt:00111184	FlyBase:FBrf0211884
 fru-pIP4	FBbt:00110557	FlyBase:FBrf0211884
 fru-pIP7	FBbt:00052690	FlyBase:FBrf0211884
+fru-pMP-a	FBbt:00052707	FlyBase:FBrf0211926
+fru-pMP-b	FBbt:00052708	FlyBase:FBrf0211926
+fru-pMP-c	FBbt:00052709	FlyBase:FBrf0211926
 fru-pMP-d	FBbt:00110505	FlyBase:FBrf0211926
+fru-pMP-e	FBbt:00052710	FlyBase:FBrf0211926
+fru-pMP-f	FBbt:00052711	FlyBase:FBrf0211926
 fru-pMP-g	FBbt:00110511	FlyBase:FBrf0211926
 fru-pMP1	FBbt:00111164	FlyBase:FBrf0211884
 fru-pMP2	FBbt:00111170	FlyBase:FBrf0211884
@@ -1566,6 +1587,7 @@ fru-pSG-e	FBbt:00110521	FlyBase:FBrf0211926
 fru-pSG1	FBbt:00111160	FlyBase:FBrf0211884
 fru-pSG2	FBbt:00111176	FlyBase:FBrf0211884
 fru-pSP-a	FBbt:00110523	FlyBase:FBrf0211926
+fru-pSP-b	FBbt:00052712	FlyBase:FBrf0211926
 fru-pSP-c	FBbt:00110527	FlyBase:FBrf0211926
 fru-pSP-d	FBbt:00110531	FlyBase:FBrf0211926
 fru-pSP-e	FBbt:00110533	FlyBase:FBrf0211926
@@ -1577,6 +1599,7 @@ fru-pSP4	FBbt:00111166	FlyBase:FBrf0211884
 fru-pSP5	FBbt:00111162	FlyBase:FBrf0211884
 fru-vAB1	FBbt:00111107	FlyBase:FBrf0211884
 fru-vAB2	FBbt:00111109	FlyBase:FBrf0211884
+fru-vAB3	FBbt:00052713	FlyBase:FBrf0211884
 fru-vMS1	FBbt:00111111	FlyBase:FBrf0211884
 fru-vMS10	FBbt:00111129	FlyBase:FBrf0211884
 fru-vMS2	FBbt:00111113	FlyBase:FBrf0211884
@@ -1593,6 +1616,7 @@ fru-vPR2	FBbt:00111133	FlyBase:FBrf0211884
 fru-vPR3	FBbt:00111135	FlyBase:FBrf0211884
 fru-vPR4	FBbt:00111137	FlyBase:FBrf0211884
 fru-vPR5	FBbt:00111139	FlyBase:FBrf0211884
+fru-vPR6	FBbt:00052714	FlyBase:FBrf0211884
 fru-vPR7	FBbt:00111141	FlyBase:FBrf0211884
 fru-vPR8	FBbt:00111143	FlyBase:FBrf0211884
 fru-vPR9	FBbt:00111145	FlyBase:FBrf0211884
@@ -5565,4 +5589,4 @@ Y4	FBbt:00003915
 Y5	FBbt:00003916	
 Y6	FBbt:00007580	
 yR7	FBbt:02000005	FlyBase:FBrf0252485
-yR8	FBbt:02000003	FlyBase:FBrf0252485
+yR8	FBbt:02000003	FlyBase:FBrf0252485

src/patterns/data/logical-only/anatomicalEntityBySex.tsv

@@ -0,0 +1,85 @@
+defined_class	defined_class_label	entity	entity_label	sex	sex_label
+FBbt:00001786	male genital primordium (female)	FBbt:00052053	male genital primordium	FBbt:00007011	female organism
+FBbt:00001788	female genital primordium (male)	FBbt:00052052	female genital primordium	FBbt:00007004	male organism
+FBbt:00047238	adult dorsal posterior Ilp7 (female) neuron	FBbt:00047239	adult dorsal posterior Ilp7 neuron	FBbt:00007011	female organism
+FBbt:00049941	descending neuron of the posterior brain DNp13 (male)	FBbt:00047646	descending neuron of the posterior brain DNp13	FBbt:00007004	male organism
+FBbt:00049942	descending neuron of the posterior brain DNp13 (female)	FBbt:00047646	descending neuron of the posterior brain DNp13	FBbt:00007011	female organism
+FBbt:00050009	neuroblast BAmas2 (male)	FBbt:00100556	neuroblast BAmas2	FBbt:00007004	male organism
+FBbt:00050010	adult BAmas2 (male) lineage clone	FBbt:00047123	adult BAmas2 lineage clone	FBbt:00007004	male organism
+FBbt:00050041	neuroblast SMPad1 (female)	FBbt:00049463	neuroblast SMPad1	FBbt:00007011	female organism
+FBbt:00050042	adult SMPad1 (female) lineage clone	FBbt:00049464	adult SMPad1 lineage clone	FBbt:00007011	female organism
+FBbt:00050148	neuroblast CREa1 (female)	FBbt:00049462	neuroblast CREa1	FBbt:00007011	female organism
+FBbt:00050149	adult CREa1 (female) lineage clone	FBbt:00049461	adult CREa1 lineage clone	FBbt:00007011	female organism
+FBbt:00050178	neuroblast BAmas2 (female)	FBbt:00100556	neuroblast BAmas2	FBbt:00007011	female organism
+FBbt:00050179	adult BAmas2 (female) lineage clone	FBbt:00047123	adult BAmas2 lineage clone	FBbt:00007011	female organism
+FBbt:00050243	neuroblast SMPad1 (male)	FBbt:00049463	neuroblast SMPad1	FBbt:00007004	male organism
+FBbt:00050244	adult SMPad1 (male) lineage clone	FBbt:00049464	adult SMPad1 lineage clone	FBbt:00007004	male organism
+FBbt:00050246	neuroblast CREa1 (male)	FBbt:00049462	neuroblast CREa1	FBbt:00007004	male organism
+FBbt:00050247	adult CREa1 (male) lineage clone	FBbt:00049461	adult CREa1 lineage clone	FBbt:00007004	male organism
+FBbt:00051201	adult aSP22 (male) descending neuron	FBbt:00051200	adult aSP22 descending neuron	FBbt:00007004	male organism
+FBbt:00051202	adult aSP22 (female) descending neuron	FBbt:00051200	adult aSP22 descending neuron	FBbt:00007011	female organism
+FBbt:00051253	adult doublesex aDN (male) neuron	FBbt:00047354	adult doublesex aDN neuron	FBbt:00007004	male organism
+FBbt:00051254	adult doublesex aDN (female) neuron	FBbt:00047354	adult doublesex aDN neuron	FBbt:00007011	female organism
+FBbt:00052055	female genital primordium (female)	FBbt:00052052	female genital primordium	FBbt:00007011	female organism
+FBbt:00052056	male genital primordium (male)	FBbt:00052053	male genital primordium	FBbt:00007004	male organism
+FBbt:00052514	larval abdominal 9 neuroblast NB5-4 (male)	FBbt:00052513	abdominal 9 neuroblast NB5-4	FBbt:00007004	male organism
+FBbt:00052515	larval abdominal 9 neuroblast NB5-4 (female)	FBbt:00052513	abdominal 9 neuroblast NB5-4	FBbt:00007011	female organism
+FBbt:00110417	adult fruitless aDT-b (female) neuron	FBbt:00052693		FBbt:00007011	female organism
+FBbt:00110421	adult fruitless aDT-d (female) neuron	FBbt:00052694		FBbt:00007011	female organism
+FBbt:00110423	adult fruitless aDT-e (female) neuron	FBbt:00052692		FBbt:00007011	female organism
+FBbt:00110433	adult fruitless aIP-b (female) neuron	FBbt:00052695		FBbt:00007011	female organism
+FBbt:00110435	adult fruitless aIP-c (female) neuron	FBbt:00052691		FBbt:00007011	female organism
+FBbt:00110437	adult fruitless aIP-d (female) neuron	FBbt:00052696		FBbt:00007011	female organism
+FBbt:00110439	adult fruitless aIP-e (female) neuron	FBbt:00052697		FBbt:00007011	female organism
+FBbt:00110443	adult fruitless aIP-g (female) neuron	FBbt:00052698		FBbt:00007011	female organism
+FBbt:00110449	adult fruitless aSP-a (female) neuron	FBbt:00052699		FBbt:00007011	female organism
+FBbt:00110451	adult fruitless aSP-b (female) neuron	FBbt:00052700		FBbt:00007011	female organism
+FBbt:00110458	adult fruitless aSP-f (female) lineage clone	FBbt:00051306	adult fruitless aSP-f lineage clone	FBbt:00007011	female organism
+FBbt:00110459	adult fruitless aSP-f (female) neuron	FBbt:00051305	adult fruitless aSP-f neuron	FBbt:00007011	female organism
+FBbt:00110460	adult fruitless aSP-g (female) lineage clone	FBbt:00049715	adult fruitless aSP-g lineage clone	FBbt:00007011	female organism
+FBbt:00110461	adult fruitless aSP-g (female) neuron	FBbt:00049909	adult fruitless aSP-g neuron	FBbt:00007011	female organism
+FBbt:00110463	adult fruitless aSP-h (female) neuron	FBbt:00052701		FBbt:00007011	female organism
+FBbt:00110465	adult fruitless aSP-i (female) neuron	FBbt:00052702		FBbt:00007011	female organism
+FBbt:00110469	adult fruitless aSP-k (female) neuron	FBbt:00052703		FBbt:00007011	female organism
+FBbt:00110479	adult fruitless pIP-a (female) neuron	FBbt:00052705		FBbt:00007011	female organism
+FBbt:00110487	adult fruitless pIP-e (female) neuron	FBbt:00052706		FBbt:00007011	female organism
+FBbt:00110493	adult fruitless pIP-h (female) neuron	FBbt:00110509	adult fruitless pMP-f (female) neuron	FBbt:00007011	female organism
+FBbt:00110499	adult fruitless pMP-a (female) neuron	FBbt:00052707		FBbt:00007011	female organism
+FBbt:00110501	adult fruitless pMP-b (female) neuron	FBbt:00052708		FBbt:00007011	female organism
+FBbt:00110503	adult fruitless pMP-c (female) neuron	FBbt:00052709		FBbt:00007011	female organism
+FBbt:00110507	adult fruitless pMP-e (female) neuron	FBbt:00052710		FBbt:00007011	female organism
+FBbt:00110509	adult fruitless pMP-f (female) neuron	FBbt:00052711		FBbt:00007011	female organism
+FBbt:00110525	adult fruitless pSP-b (female) neuron	FBbt:00052712		FBbt:00007011	female organism
+FBbt:00110555	adult fruitless aSP4 (male) neuron	FBbt:00052704		FBbt:00007004	male organism
+FBbt:00110579	adult fruitless aDT-b (male) neuron	FBbt:00052693		FBbt:00007004	male organism
+FBbt:00110581	adult fruitless aDT-d (male) neuron	FBbt:00052694		FBbt:00007004	male organism
+FBbt:00110583	adult fruitless aDT-e (male) neuron	FBbt:00052692		FBbt:00007004	male organism
+FBbt:00110585	adult fruitless aIP-b (male) neuron	FBbt:00052695		FBbt:00007004	male organism
+FBbt:00110587	adult fruitless aIP-c (male) neuron	FBbt:00052691		FBbt:00007004	male organism
+FBbt:00110589	adult fruitless aIP-d (male) neuron	FBbt:00052696		FBbt:00007004	male organism
+FBbt:00110591	adult fruitless aIP-e (male) neuron	FBbt:00052697		FBbt:00007004	male organism
+FBbt:00110593	adult fruitless aIP-g (male) neuron	FBbt:00052698		FBbt:00007004	male organism
+FBbt:00110595	adult fruitless aSP-a (male) neuron	FBbt:00052699		FBbt:00007004	male organism
+FBbt:00110597	adult fruitless aSP-b (male) neuron	FBbt:00052700		FBbt:00007004	male organism
+FBbt:00110598	adult fruitless aSP-f (male) lineage clone	FBbt:00051306	adult fruitless aSP-f lineage clone	FBbt:00007004	male organism
+FBbt:00110599	adult fruitless aSP-f (male) neuron	FBbt:00051305	adult fruitless aSP-f neuron	FBbt:00007004	male organism
+FBbt:00110600	adult fruitless aSP-g (male) lineage clone	FBbt:00049715	adult fruitless aSP-g lineage clone	FBbt:00007004	male organism
+FBbt:00110601	adult fruitless aSP-g (male) neuron	FBbt:00049909	adult fruitless aSP-g neuron	FBbt:00007004	male organism
+FBbt:00110603	adult fruitless aSP-h (male) neuron	FBbt:00052701		FBbt:00007004	male organism
+FBbt:00110605	adult fruitless aSP-i (male) neuron	FBbt:00052702		FBbt:00007004	male organism
+FBbt:00110607	adult fruitless aSP-k (male) neuron	FBbt:00052703		FBbt:00007004	male organism
+FBbt:00110609	adult fruitless pIP-a (male) neuron	FBbt:00052705		FBbt:00007004	male organism
+FBbt:00110611	adult fruitless pIP-e (male) neuron	FBbt:00052706		FBbt:00007004	male organism
+FBbt:00110613	adult fruitless pIP-h (male) neuron	FBbt:00110623	adult fruitless pMP-f (male) neuron	FBbt:00007004	male organism
+FBbt:00110615	adult fruitless pMP-a (male) neuron	FBbt:00052707		FBbt:00007004	male organism
+FBbt:00110617	adult fruitless pMP-b (male) neuron	FBbt:00052708		FBbt:00007004	male organism
+FBbt:00110619	adult fruitless pMP-c (male) neuron	FBbt:00052709		FBbt:00007004	male organism
+FBbt:00110621	adult fruitless P1 (male) neuron	FBbt:00052710		FBbt:00007004	male organism
+FBbt:00110623	adult fruitless pMP-f (male) neuron	FBbt:00052711		FBbt:00007004	male organism
+FBbt:00110625	adult fruitless pSP-b (male) neuron	FBbt:00052712		FBbt:00007004	male organism
+FBbt:00110850	adult fruitless vAB3 (female) neuron	FBbt:00052713		FBbt:00007011	female organism
+FBbt:00110852	adult fruitless vAB3 (male) neuron	FBbt:00052713		FBbt:00007004	male organism
+FBbt:00110860	adult fruitless vPR6 (male) neuron	FBbt:00052714		FBbt:00007004	male organism
+FBbt:00111150	adult fruitless vPR6 (female) neuron	FBbt:00052714		FBbt:00007011	female organism
+FBbt:00111198	adult fruitless aSP4 (female) neuron	FBbt:00052704		FBbt:00007011	female organism
+FBbt:00111305	adult dorsal posterior Ilp7 (male) neuron	FBbt:00047239	adult dorsal posterior Ilp7 neuron	FBbt:00007004	male organism

src/patterns/data/logical-only/glomerulusWithNeuropilAndInputNeurons.tsv

@@ -146,4 +146,4 @@ FBbt:00100452	larval MB calyx glomerulus A5	FBbt:00005386	glomerulus	FBbt:000071
 FBbt:00100531	antennal lobe glomerulus DC4	FBbt:00005386	glomerulus	FBbt:00007401	adult antennal lobe	FBbt:00111210	adult olfactory receptor neuron Ir64a DC4
 FBbt:00110028	antennal lobe glomerulus VM7d	FBbt:00003973	antennal lobe glomerulus VM7	FBbt:00007401	adult antennal lobe	FBbt:00067042	adult olfactory receptor neuron Or42a
 FBbt:00110029	antennal lobe glomerulus VM6	FBbt:00005386	glomerulus	FBbt:00007401	adult antennal lobe	FBbt:00048140	adult olfactory receptor neuron Amt/Rh50
-FBbt:00110865	antennal lobe glomerulus VP4	FBbt:00003926	antennal lobe glomerulus VP	FBbt:00007401	adult antennal lobe	FBbt:00047225	adult hygrosensory neuron Ir40a VP4
+FBbt:00110865	antennal lobe glomerulus VP4	FBbt:00003926	antennal lobe glomerulus VP	FBbt:00007401	adult antennal lobe	FBbt:00047225	adult hygrosensory neuron Ir40a VP4