Release v1.3.3

This is a small bugfix release that includes notable fixes for the
methylation/modifications drawing (the negative strand reads displayed the data
incorrectly) and the reference name selector

Please check the release notes for more details!

1.3.3 (2021-08-02)

Packages in this release

Package	Download
@jbrowse/core	https://www.npmjs.com/package/@jbrowse/core
@jbrowse/plugin-alignments	https://www.npmjs.com/package/@jbrowse/plugin-alignments
@jbrowse/plugin-breakpoint-split-view
@jbrowse/plugin-circular-view	https://www.npmjs.com/package/@jbrowse/plugin-circular-view
@jbrowse/plugin-config	https://www.npmjs.com/package/@jbrowse/plugin-config
@jbrowse/plugin-data-management	https://www.npmjs.com/package/@jbrowse/plugin-data-management
@jbrowse/plugin-dotplot-view
@jbrowse/plugin-filtering
@jbrowse/plugin-gff3	https://www.npmjs.com/package/@jbrowse/plugin-gff3
@jbrowse/plugin-hic
@jbrowse/plugin-legacy-jbrowse	https://www.npmjs.com/package/@jbrowse/plugin-legacy-jbrowse
@jbrowse/plugin-linear-comparative-view
@jbrowse/plugin-linear-genome-view	https://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view
@jbrowse/plugin-lollipop
@jbrowse/plugin-menus
@jbrowse/plugin-sequence	https://www.npmjs.com/package/@jbrowse/plugin-sequence
@jbrowse/plugin-spreadsheet-view
@jbrowse/plugin-sv-inspector
@jbrowse/plugin-svg	https://www.npmjs.com/package/@jbrowse/plugin-svg
@jbrowse/plugin-trackhub-registry
@jbrowse/plugin-variants	https://www.npmjs.com/package/@jbrowse/plugin-variants
@jbrowse/plugin-wiggle	https://www.npmjs.com/package/@jbrowse/plugin-wiggle
@jbrowse/cli	https://www.npmjs.com/package/@jbrowse/cli
@jbrowse/desktop
@jbrowse/react-linear-genome-view	https://www.npmjs.com/package/@jbrowse/react-linear-genome-view
@jbrowse/web

🚀 Enhancement

• Other
  • #2127 Add example dataset for COLO829 (@cmdcolin)
• core
  • #2141 Update to @material-ui/core@4.12.2 (@cmdcolin)
  • #2126 Allow opening plaintext .vcf files from the "Add track" workflow (@cmdcolin)

🐛 Bug Fix

• Other
  • #2159 Stop local storage quota-exceeded errors preventing the app from starting (@cmdcolin)
  • #2161 Remove outline from clicking on SVG chord tracks (@cmdcolin)
  • #2157 Fix rendering of negative strand alignment modifications/methylation (@cmdcolin)
  • #2131 Fix mouseovers/click handlers after "force load" button pressed (@cmdcolin)
  • #2128 Fix using the "Color by modifications" setting on files that need ref renaming (@cmdcolin)
  • #2115 Fix bug where sometimes plugin could not be removed from UI (@garrettjstevens)
  • #2119 Fix loading indicator on the reference sequence selector getting stuck (@cmdcolin)
• core
  • #2101 Fix behavior of the end-of-list indicator in refNameAutocomplete to always display as a disabled item (@teresam856)

🏠 Internal

• Other
  • #2152 Remove storybook symlink workaround (@garrettjstevens)
• core
  • #2099 Use rbush data structure for layout of feature tracks (@cmdcolin)

Committers: 3

• Colin Diesh (@cmdcolin)
• Garrett Stevens (@garrettjstevens)
• Teresa Martinez (@teresam856)