This repository provides solutions to the interactive bioinformatics tutorials available on sandbox.bio. These tutorials cover various aspects of bioinformatics, offering hands-on experience with command-line tools directly in the browser. Each tutorial is designed to help users explore and analyze biological data effectively.
sandbox.bio is a platform offering interactive bioinformatics tutorials that run entirely in the browser. By compiling bioinformatics command-line tools into WebAssembly, sandbox.bio allows users to experiment and learn without the need for local installations. The tutorials cover a wide range of topics, from terminal basics to advanced data analysis techniques, providing a comprehensive learning experience for both beginners and experienced practitioners.
The repository is organized into directories corresponding to the main categories of sandbox.bio tutorials:
- Data_exploration: Tutorials focused on exploring and manipulating data using command-line tools.
- File_formats: Tutorials dealing with different biological file formats and their processing.
- Quality_control: Tutorials aimed at assessing and ensuring the quality of biological data.
- Data_analysis: Tutorials covering various data analysis techniques in bioinformatics.
Within each directory, you'll find Bash scripts named after their respective tutorials. Each script contains all the commands used in the corresponding tutorial, allowing you to replicate the tutorial steps locally.
- Begin by cloning this repository to your local machine using the following command:
git clone https://github.com/GiatrasKon/sandbox.bio-Solutions.git- Navigate to the directory that corresponds to the tutorial category you're interested in. For example:
cd sandbox-bio-solutions/Data_exploration- Review the specific tutorial script of interest to understand the commands. This will enhance your learning experience and deepen your comprehension of the underlying concepts.
Note: Ensure that all necessary tools and dependencies are installed on your system. The scripts are designed to mirror the commands used in the sandbox.bio tutorials, which operate within a browser-based environment. Some commands or tools might require specific installations or configurations on your local machine.