Gottwein Lab
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DepMap_Mining
DepMap_Mining PublicCode for identifying cohort-specific oncogenic dependencies and cohort-insensitive pan-essentials using DepMap + a cohort of CRISPR screens analyzed with MAGeCk.
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2022_cFLIP_Stats_Figures
2022_cFLIP_Stats_Figures PublicCode and workbooks for figures and statistical testing from 2022 manuscript in preparation.
Jupyter Notebook
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Gottwein_CRISPR_Variant_Calling
Gottwein_CRISPR_Variant_Calling PublicScript for characterizing and quantiftying variants based on data returned from the Massachusetts General Hospital CCIB DNA Core.
Python
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CRISPR_Screen_Processing
CRISPR_Screen_Processing PublicForked from nkuehnle/CRISPR_Screen_Processing
A basic working example that you can follow through to semi-automate the analysis of pooled CRISPR screen data in a uniform way using MAGeCK and/or DrugZ for enrichment/depletion analysis. See Read…
Shell
Repositories
- Gottwein_CRISPR_Variant_Calling Public
Script for characterizing and quantiftying variants based on data returned from the Massachusetts General Hospital CCIB DNA Core.
Gottwein-Lab/Gottwein_CRISPR_Variant_Calling’s past year of commit activity - 2022_cFLIP_Stats_Figures Public
Code and workbooks for figures and statistical testing from 2022 manuscript in preparation.
Gottwein-Lab/2022_cFLIP_Stats_Figures’s past year of commit activity - DepMap_Mining Public
Code for identifying cohort-specific oncogenic dependencies and cohort-insensitive pan-essentials using DepMap + a cohort of CRISPR screens analyzed with MAGeCk.
Gottwein-Lab/DepMap_Mining’s past year of commit activity - CRISPR_Screen_Processing Public Forked from nkuehnle/CRISPR_Screen_Processing
A basic working example that you can follow through to semi-automate the analysis of pooled CRISPR screen data in a uniform way using MAGeCK and/or DrugZ for enrichment/depletion analysis. See ReadMe for more details. Testing table files are templates, not working examples.
Gottwein-Lab/CRISPR_Screen_Processing’s past year of commit activity
