update installation and viewer to include napari-sam plugin

src/client/dcp_client/gui/napari_window.py

@@ -38,6 +38,8 @@ def __init__(self, app: Application) -> None:
 
         # Set the viewer
         self.viewer = napari.Viewer(show=False)
+        self.viewer.window.add_plugin_dock_widget("napari-sam")
+
         self.viewer.add_image(img, name=get_path_stem(self.app.cur_selected_img))
         for seg_file in self.seg_files:
             self.viewer.add_labels(

src/client/pyproject.toml

@@ -1,47 +1,3 @@
 [build-system]
-requires = ["setuptools>=61.0"]
+requires = ["setuptools>=42", "wheel"]
 build-backend = "setuptools.build_meta"
-
-[tool.setuptools]
-packages = ['dcp_client']
-
-[tool.setuptools.dynamic]
-dependencies = {file = ["requirements.txt"]}
-
-[project]
-name = "data-centric-platform-client"
-version = "0.1"
-requires-python = ">=3.9"
-description = "The client of the data centric platform for microscopy image segmentation"
-keywords = []
-classifiers = [
-    "Programming Language :: Python :: 3",
-    "Operating System :: OS Independent",
-]
-readme = "README.md"
-dynamic = ["dependencies"]
-authors = [
-  {name="Christina Bukas", email="christina.bukas@helmholtz-munich.de"},
-  {name="Helena Pelin", email="helena.pelin@helmholtz-munich.de"},
-  {name="Mariia Koren", email="mariia.koren@helmholtz-munich.de"},
-  {name="Marie Piraud", email="marie.piraud@helmholtz-munich.de"},
-]
-maintainers = [
-  {name="Christina Bukas", email="christina.bukas@helmholtz-munich.de"},
-  {name="Helena Pelin", email="helena.pelin@helmholtz-munich.de"}
-]
-
-[project.optional-dependencies]
-dev = [
-  "pytest>=7.4.3",
-  "pytest-qt>=4.2.0",
-  "sphinx",
-  "sphinx-rtd-theme"
-]
-
-[project.urls]
-repository = "https://github.com/HelmholtzAI-Consultants-Munich/data-centric-platform"
-documentation = "https://readthedocs.org/projects/data-centric-platform"
-
-[project.scripts]
-dcp-client = "dcp_client.main:main"

src/client/setup.py

@@ -0,0 +1,51 @@
+from setuptools import setup, find_packages
+
+setup(
+    name="data-centric-platform-client",
+    version="0.1",
+    description="The client of the data centric platform for microscopy image segmentation",
+    author=["Christina Bukas", 
+            "Helena Pelin",
+            "Mariia Koren",
+            "Marie Piraud"],
+    author_email= ["christina.bukas@helmholtz-munich.de",
+                   "helena.pelin@helmholtz-munich.de",
+                   "mariia.koren@helmholtz-munich.de",
+                   "marie.piraud@helmholtz-munich.de"],
+    url="https://github.com/HelmholtzAI-Consultants-Munich/data-centric-platform",
+    packages=find_packages(),
+    install_requires=[
+        "napari[pyqt5]>=0.4.17",
+        "segment-anything @ git+https://github.com/facebookresearch/segment-anything.git@main",
+        "torch",
+        "torchvision",
+        "napari-sam @ git+https://github.com/christinab12/napari-sam.git@main",
+        "bentoml[grpc]>=1.2.5",
+    ],
+    extras_require={
+        "dev": [
+            "pytest>=7.4.3",
+            "pytest-qt>=4.2.0",
+            "sphinx",
+            "sphinx-rtd-theme",
+        ]
+    },
+    entry_points={
+        "console_scripts": [
+            "dcp-client=dcp_client.main:main",
+        ]
+    },
+    python_requires=">=3.9",
+    keywords=[],  
+    classifiers=[  
+        "Programming Language :: Python :: 3",
+        "Operating System :: OS Independent",
+    ],
+    long_description=open("README.md").read(),  
+    maintainer=["Christina Bukas", "Helena Pelin"], 
+    maintainer_email=["christina.bukas@helmholtz-munich.de", "helena.pelin@helmholtz-munich.de"],
+    project_urls={ 
+        "Repository": "https://github.com/HelmholtzAI-Consultants-Munich/data-centric-platform",
+        "Documentation": "https://readthedocs.org/projects/data-centric-platform",
+    }
+)