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Update dcp_client_installation.rst
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christinab12 authored May 3, 2024
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5. **The viewer**
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In DCP, we use [napari](https://napari.org/stable) for viewing our images and masks, adding, editing or removing labels. An example of the viewer can be seen below. After adding or removing any objects and editing existing objects wherever necessary, there are two options available:
In DCP, we use [napari](https://napari.org/stable) for viewing our images and masks, adding, editing or removing labels. The newest version of DCP comes with `napari-sam <https://www.napari-hub.org/plugins/napari-sam>`_ integration, to enable even faster labelling! Check out the turorial on the napari-hub to find out how to use this tool. An example of the viewer can be seen below. After adding or removing any objects and editing existing objects wherever necessary, there are two options available:

- Click the **Move to Curation in progress folder** if you are not 100% certain about the labels you have created. You can also click on the label in the labels layer and change the name. This will result in several label files being created in the *In progress folder*, which can be examined later on. **Note:** When changing the layer name in Napari, the user should rename it such that they add their initials or any other new info after _seg. E.g., if the labels of 1_seg.tiff have been changed in the Napari viewer, then the appropriate naming would for example be: 1_seg_CB.tiff and not 1_CB_seg.tiff.
- Click the **Move to Curated dataset folder** if you are certain that the labels you are now viewing are final and require no more curation. These images and labels will later be used for training the machine learning model, so make sure that you select this option only if you are certain about the labels. If several labels are displayed (opened from the 'Curation in progress' step), make sure to **click** on the single label in the labels layer list you wish to be moved to the *Curated data folder*. The other images will then be automatically deleted from this folder.
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