Releases: James-Thorson-NOAA/FishLife
Releases · James-Thorson-NOAA/FishLife
Updating vignettes and adding pkgdown site
See NEWS for details
Adding Zenodo DOI
Fixing Zenodo to compensate for NOAA-enforced account name change
Phylogenetic structural equation models and fish morphometrics
Adding major new features:
- Allowing trait-covariance to be estimated as a structural equation model (SEM), using input format from
package:sem
- Switching to use
package:ape
for internal representation of evolutionary relatedness, either using existing taxonomic structure converted to a tree, or specifying an additive tree; - Adding new options to coerce output to common objects
- Adding data and results when fitting phylogenetic SEM to life-history parameters as well as habitat, reproductive, spawning, trophic, morphometric, and other traits for all described fishes.
Update dependencies
... to require a version of rfishbase
prior to release 4.0.0
, when taxa-table rfishbase::fishbase
as used in FishLife::Plot_taxa
was replaced by rfishbase::load_taxa()
Adding stock-recruit parameters
Adding stock-recruit parameter estimates based on stock-recruit records from the RAM Legacy stock-recruit database. The addition of stock-recruit parameters completes the full life-cycle for fishes, and then allows population-dynamics parameters (generation time, intrinsic growth rate) to be calculated.
Fixed more bugs from changing name to `FishLife`
Fix bugs from changing package name to `FishLife`
... and also release Shiny package: https://james-thorson.shinyapps.io/FishLife/
Initial public release
v1.0.0 small change to plots