v4.1.0

Merges, splits, and reorders correctly. Stable release, with some outstanding bugs.

v4.0.0

All the v4.0.0-b goodness, plus a fix around assigning spikes to clusters when their center sites are far away.

v4.0.0-beta, patch 1

• Kilosort importer reads from NPY files instead of rez.mat (npy-matlab is required for this feature)
• spikesRaw and spikesFilt are written to disk as they are computed, rather than all at once, to save memory (restores v3 behavior)
• removes JRC/saveBinaries due to the above
• New parameter: extractAfterDetect allows you to specify whether you want your features computed after ALL spikes are detected or on a per-chunk, per-file basis.
• Fixes a bug in saveRes which caused fields of inconsistent size to be saved if clusters had been automerged.

v4.0.0-beta

See CHANGELOG for details

v4.0.0-alpha, patch 6

Bug fixes and enhancements

v4.0.0-alpha, patch 5

Fixes #70, #71, #86, #88. Partially addresses #85.

v4.0.0-alpha, patch 4

• Fixes errors around ignoreSites
• Reimplements ignoreChans
• Fixes crash in "File > Save" menu callback

v4.0.0-alpha, patch 2

Bug fixes and some minor enhancements (see CHANGELOG.txt for details)

4.0.0 alpha, patch 1

Bug fixes and minor enhancements

v3.2.5

Bug fixes

1. Centered cluster average waveforms are properly saved.
   trWav_spk_clu for filtered waveforms and trWav_raw_clu for raw waveforms
   tmrWav_spk_clu and tmrWav_raw_clu have worked properly, which saves waveforms at all sites.

2. Selecting 'vpp' (peak-to-peak voltage) calcultes different values depending on whether you are displaying filtered or raw waveforms.

• When 'pca' or 'ppca' (private pca) features are selected, PCA values are computed for the filtered waveforms whether or not the raw waveforms are displayed.

3. Manual GUI: The x-axis labels on the waveform view are displayed properly without overlapping for smaller monitor size.

• To prevent overlapping displays, the text size is decreased and text angle is rotated (new feature since Matlab 2016b).

New features

1. Manual GUI: 'ppca' (private PCA) option is added under "Projection" menu.

• When one unit is selected, filtered spike waveforms are projected to the first and second principal vectors of the selected unit for each site.
• When two units are selected, filtered spike waveforms are projected to the first principal axes of the two selected units for each site.

2. "jrc export-chan myparam.prm chan-list" exports channel(s) on "chan-list" to the Matlab workspace and to a binary file (_ch#.jrc).

• To export more than one channel, use "," or ":" without space.
• For example, run "jrc export-chan 33,34,35" or "jrc export-chan 33:35" to export channels 33-35.

3. "jrc export-lfp" to export the LFP waveforms (ordered by the site numbers) to the Matlab workspace.

• "mnLfp" has a nSamples x nSites dimension, and stores the LFP waveforms in the original data type (16-bit integer by default).
• "mrSiteXY" has a nSites x 2 dimension, and stores x and y coordinate for the sites (in micrometers)
• To extract a column of sites located at x=0, run "mnLfp(:, mrSiteXY(:,1)==0)"