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Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Arctic Code Vault Contributor

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@WilsonImmunologyLab

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LeiLi-Uchicago/README.md

Hi there, I'm Lei Li

I'm a Lead Bioinformatics Research Scientist at St. Jude Children's Research Hospital.

I am interested in developing computational tools and algorithms to facilitate biological researches.


RECENT PROJECTS

RSVrecon: An efficient workflow to screen clinically relevant genomic variations of RSV from NGS data.
   
   

HTOeader A hybrid demultiplexing strategy that improves performance and robustness of cell hashing. Paper
   
   

VGenes: an integrated graphical tool for efficient, comprehensive and multimodal analyses of massive B-cell repertoire sequences.
   
   

Librator: a platform for optimized sequence editing, design, and expression of influenza virus proteins.
   
   

LinQ-View is a joint single cell analysis strategy that could integrate information from both transcriptome and surface protein markers for cell heterogeneity identification.
   

Cookie: Selecting representative samples from single cell atlas using k-medoids clustering.
   
   

Pinned Loading

  1. WilsonImmunologyLab/VGenes WilsonImmunologyLab/VGenes Public

    VGene development

    Python 6 3

  2. WilsonImmunologyLab/Librator WilsonImmunologyLab/Librator Public

    Librator software development

    Python 3 1

  3. WilsonImmunologyLab/LinQView WilsonImmunologyLab/LinQView Public

    Integrate multiple modalities for single cell populations identification

    R 3 2

  4. WilsonImmunologyLab/Cookie WilsonImmunologyLab/Cookie Public

    Cookie: representative samples selection from a large population using k-medoids clustering

    R 2 1

  5. WilsonImmunologyLab/HTOreader WilsonImmunologyLab/HTOreader Public

    R 3 1

  6. stjudecab/RSVreconPy stjudecab/RSVreconPy Public

    A pipeline for Viral genome assembly from NGS data

    Python