Release v0.9.4

What's Changed

• New release v0.9.4 by @yohanchatelain in #77

Full Changelog: v0.9.3...v0.9.4

Release v0.9.3

What's Changed

• Fix download of T1 images. by @mathdugre in #53
• Updates following PPMI data schema update by @glatard in #54
• Fix download of nifti images by @mathdugre in #58
• [FIX] #57. Years were not accounted for when calculating month diff. by @mathdugre in #59
• Raise exception when find_nifti_file_in_cache cannot find nitfi file by @mina94az in #62
• [REFACTOR] SPM functions + [ADD] SPM pairwise registration by @mathdugre in #63
• [ADD] SPM normalization and smoothing function. by @mathdugre in #65
• [ADD] Now raise an exception if downloading files fails. by @mathdugre in #64
• [FIX] PPMI filename change. by @mathdugre in #68
• [FIX] change in filename in PPMI. by @mathdugre in #71
• [FIX] Deprecation of column name in PPMI. by @mathdugre in #66
• [FIX] Use hashlib for deterministic hashing. by @mathdugre in #72
• Update zeighamietal module by @michellewang in #70
• [DEPRECATE] PPMI download of NIfTI files. by @mathdugre in #73
• [FIX] api break in ppmi_downloader by @mathdugre in #74
• Release v0.9.3 by @yohanchatelain in #76

New Contributors

• @mina94az made their first contribution in #62

Full Changelog: v0.9...v0.9.3

Release 0.9

• Major update in MRI metadata notebook (mri_metadata.ipynb) to take into account @michellewang's finding that many T1 images (~800) are mislabeled as PD images in LONI.

v0.8

What's Changed

• [FIX] Release Selenium driver after download is completed. by @mathdugre in #32
• Fix linting issues causing failed test. by @mathdugre in #34
• [REMOVE] [FIX #33] leaked patno during download of nifti files. by @mathdugre in #35
• [FIX] unbound object was accessed. by @mathdugre in #40
• Minor fixes in SPM pipeline by @glatard in #36
• [REFACTOR] Move the setup.py to pyproject.toml. by @mathdugre in #39
• [FIX] correct the API when using the Downloader API by @mathdugre in #37
• [ADD] cli to download T1 nifti files outside. by @mathdugre in #38
• [ADD] utilities to ignore subject without leaking their identities. by @mathdugre in #44
• Small fixes by @glatard in #43
• [ADD] documentation for the livingpark_utils/ignore.py functions. by @mathdugre in #45
• Update requirements for ppmi-downloader by @yohanchatelain in #50

Full Changelog: v0.7.1...v0.8

Release 0.7.1

Fixed long description in setup.py

Release 0.7

New features

• Major code re-organization

Bug fixes

• Changed output directory of MRI notebook to inputs/study_files

Release 0.6

• Removed auto-update of dependencies

Bug fixes:

• Added missing SPM template files to package
• Fixed QC visualization in MNI space

Release 0.5

New modules

• maketal: helper functions for Mak et al papers
• zeighamietal: helper functions for Zeighami et al papers

New functions

• spm_*: SPM voxel-based morphometry pipeline

Bug fixes

• Package upgrade during pip install
• Hide output of auto-generated notebook scripts

Release 0.4

New functions

• qc_spm_segmentations
• Medical and MRI notebooks can now be called as functions

Bug fixes

• HTML button did not load properly
• Fix for Windows symbolic links

Release 0.3.1

Bug fix: added missing SPM batch template