MAINT: Python 3.12 cleanups part 2 #4301
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* `PyUnicode_GetSize` has been deprecated since CPython 3.3, and is now gone in 3.12, so replace it with the suggestion from the official docs, `PyUnicode_GET_LENGTH`; this seems to fix 9 more failures with `3.12.0rc3` locally while still passing with `3.11.x` * while I'm in the `transformations` neighborhood, get rid of the Python 2.x shims peppered all over the place--we're long past supporting that [skip cirrus]
Linter Bot Results:Hi @tylerjereddy! Thanks for making this PR. We linted your code and found the following: There are currently no issues detected! 🎉 |
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Additional details and impacted files@@ Coverage Diff @@
## develop #4301 +/- ##
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Coverage 93.40% 93.40%
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Files 170 184 +14
Lines 22257 23365 +1108
Branches 4071 4071
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+ Hits 20790 21825 +1035
- Misses 951 1024 +73
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tylerjereddy
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* force the use of a relative path for `mkdtemp` in our source code because, from the Python `3.12` release notes: > `tempfile.mkdtemp() now always returns an absolute path, even if the argument provided to the dir parameter is a relative path.` * with this patch, the full testsuite now passes on Python `3.12.0` (which is now out) when combined with MDAnalysisgh-4301 and MDAnalysisgh-4300 (though see my cautions about thread safety/concurrency for the latter) * this fixes the 1 remaining failure with 3.12: `MDAnalysisTests/analysis/test_hole2.py::TestCheckAndFixLongFilename::test_symlink_dir` [skip cirrus]
richardjgowers
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IAlibay
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Oct 12, 2023
* force the use of a relative path for `mkdtemp` in our source code because, from the Python `3.12` release notes: > `tempfile.mkdtemp() now always returns an absolute path, even if the argument provided to the dir parameter is a relative path.` * with this patch, the full testsuite now passes on Python `3.12.0` (which is now out) when combined with gh-4301 and gh-4300 (though see my cautions about thread safety/concurrency for the latter) * this fixes the 1 remaining failure with 3.12: `MDAnalysisTests/analysis/test_hole2.py::TestCheckAndFixLongFilename::test_symlink_dir` [skip cirrus]
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PyUnicode_GetSizehas been deprecated since CPython 3.3, and is now gone in 3.12, so replace it with the suggestion from the official docs,PyUnicode_GET_LENGTH; this seems to fix 9 more failures with3.12.0rc3locally while still passing with3.11.xwhile I'm in the
transformationsneighborhood, get rid of the Python 2.x shims peppered all over the place--we're long past supporting that[skip cirrus]
📚 Documentation preview 📚: https://mdanalysis--4301.org.readthedocs.build/en/4301/