Merge pull request #116 from MannLabs/prepare-release

Prepare release

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 1.1.0
+current_version = 1.1.1
 commit = True
 tag = False
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\-(?P<release>[a-z]+)(?P<build>\d+))?

alphabase/__init__.py

@@ -2,7 +2,7 @@
 
 
 __project__ = "alphabase"
-__version__ = "1.1.0"
+__version__ = "1.1.1"
 __license__ = "Apache"
 __description__ = "An infrastructure Python package of the AlphaX ecosystem"
 __author__ = "Mann Labs"

docs/conf.py

@@ -23,7 +23,7 @@
 copyright = '2022, Mann Labs, MPIB'
 author = 'Mann Labs, MPIB'
 
-release = "1.1.0"
+release = "1.1.1"
 
 # -- General configuration ---------------------------------------------------
 

nbdev_nbs/protein/annotate_fasta.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -12,7 +12,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -22,7 +22,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 12,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -65,7 +65,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 15,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -91,7 +91,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 20,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -104,21 +104,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "alpha",
+   "display_name": "python3",
    "language": "python",
    "name": "python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.9.13"
   }
  },
  "nbformat": 4,

release/one_click_linux_gui/control

@@ -1,5 +1,5 @@
 Package: AlphaBase
-Version: 1.1.0
+Version: 1.1.1
 Architecture: all
 Maintainer: Mann Labs <opensource@alphapept.com>
 Description: AlphaBase

release/one_click_linux_gui/create_installer_linux.sh

@@ -17,7 +17,7 @@ python setup.py sdist bdist_wheel
 # Setting up the local package
 cd release/one_click_linux_gui
 # Make sure you include the required extra packages and always use the stable or very-stable options!
-pip install "../../dist/alphabase-1.1.0-py3-none-any.whl[stable]"
+pip install "../../dist/alphabase-1.1.1-py3-none-any.whl[stable]"
 
 # Creating the stand-alone pyinstaller folder
 pip install pyinstaller

release/one_click_macos_gui/Info.plist

@@ -9,9 +9,9 @@
 	<key>CFBundleIconFile</key>
 	<string>alpha_logo.icns</string>
 	<key>CFBundleIdentifier</key>
-	<string>alphabase.1.1.0</string>
+	<string>alphabase.1.1.1</string>
 	<key>CFBundleShortVersionString</key>
-	<string>1.1.0</string>
+	<string>1.1.1</string>
 	<key>CFBundleInfoDictionaryVersion</key>
 	<string>6.0</string>
 	<key>CFBundleName</key>

release/one_click_macos_gui/create_installer_macos.sh

@@ -20,7 +20,7 @@ python setup.py sdist bdist_wheel
 
 # Setting up the local package
 cd release/one_click_macos_gui
-pip install "../../dist/alphabase-1.1.0-py3-none-any.whl[stable]"
+pip install "../../dist/alphabase-1.1.1-py3-none-any.whl[stable]"
 
 # Creating the stand-alone pyinstaller folder
 pip install pyinstaller
@@ -40,5 +40,5 @@ cp ../../LICENSE.txt Resources/LICENSE.txt
 cp ../logos/alpha_logo.png Resources/alpha_logo.png
 chmod 777 scripts/*
 
-pkgbuild --root dist/alphabase --identifier de.mpg.biochem.alphabase.app --version 1.1.0 --install-location /Applications/AlphaBase.app --scripts scripts AlphaBase.pkg
+pkgbuild --root dist/alphabase --identifier de.mpg.biochem.alphabase.app --version 1.1.1 --install-location /Applications/AlphaBase.app --scripts scripts AlphaBase.pkg
 productbuild --distribution distribution.xml --resources Resources --package-path AlphaBase.pkg dist/alphabase_gui_installer_macos.pkg

release/one_click_macos_gui/distribution.xml

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="utf-8" standalone="no"?>
 <installer-script minSpecVersion="1.000000">
-    <title>AlphaBase 1.1.0</title>
+    <title>AlphaBase 1.1.1</title>
     <background mime-type="image/png" file="alpha_logo.png" scaling="proportional"/>
     <welcome file="welcome.html" mime-type="text/html" />
     <conclusion file="conclusion.html" mime-type="text/html" />

release/one_click_windows_gui/alphabase_innoinstaller.iss

@@ -2,7 +2,7 @@
 ; SEE THE DOCUMENTATION FOR DETAILS ON CREATING INNO SETUP SCRIPT FILES!
 
 #define MyAppName "AlphaBase"
-#define MyAppVersion "1.1.0"
+#define MyAppVersion "1.1.1"
 #define MyAppPublisher "Max Planck Institute of Biochemistry and the University of Copenhagen, Mann Labs"
 #define MyAppURL "https://github.com/MannLabs/alphabase"
 #define MyAppExeName "alphabase_gui.exe"

release/one_click_windows_gui/create_installer_windows.sh

@@ -17,7 +17,7 @@ python setup.py sdist bdist_wheel
 # Setting up the local package
 cd release/one_click_windows_gui
 # Make sure you include the required extra packages and always use the stable or very-stable options!
-pip install "../../dist/alphabase-1.1.0-py3-none-any.whl[stable]"
+pip install "../../dist/alphabase-1.1.1-py3-none-any.whl[stable]"
 
 # Creating the stand-alone pyinstaller folder
 pip install pyinstaller

settings.ini

@@ -4,7 +4,7 @@
 ### Python library ###
 repo = alphabase
 lib_name = alphabase
-version = 1.1.0
+version = 1.1.1
 min_python = 3.7
 license = apache2