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Refactor readers iv #246

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Trying to simplify the inheritance structure

  • make self.csv_sep a ordinary variable
  • move some logic up to the reader base class
  • extract static helper methods to utils.py, add tests

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"[Phospho]",
"_(Phospho)",
"_[Phospho]",
]
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@jalew188 just by symmetry, I would expect (Phospho) here too?

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It should be, but I am not sure what is this testing for.

@@ -0,0 +1,113 @@
"""Utility functions for PSM readers."""
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only moved code

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