Merge branch 'config-update-feature' of https://github.com/MannLabs/a…

…lphadia into config-update-feature
MannLabs · Jan 27, 2024 · 8b406c6 · 8b406c6
2 parents 081515f + 88faa2b
commit 8b406c6
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diff --git a/alphadia/features.py b/alphadia/features.py
@@ -864,10 +864,11 @@ def fragment_features(
     is_y = fragments.type == 121
 
     if np.sum(is_b) > 0 and np.sum(is_y) > 0:
-
         min_y = fragments.position[is_y].min()
         max_b = fragments.position[is_b].max()
-        overlapping = (is_y & (fragments.position < max_b)) | (is_b & (fragments.position > min_y))
+        overlapping = (is_y & (fragments.position < max_b)) | (
+            is_b & (fragments.position > min_y)
+        )
 
         # n_overlapping
         feature_array[43] = overlapping.sum()

diff --git a/alphadia/plexscoring.py b/alphadia/plexscoring.py
@@ -1678,9 +1678,8 @@ def collect_candidates(
             "mean_ms2_mass_error",
             "n_overlapping",
             "mean_overlapping_intensity",
-            "mean_overlapping_mass_error"
+            "mean_overlapping_mass_error",
         ]
-
 
         precursor_idx, rank, features = psm_proto_df.to_precursor_df()