Merge pull request #434 from MannLabs/lib-fix

Hotfix for alphaBase bug
MannLabs · Jan 17, 2025 · b9aa274 · b9aa274
2 parents ff2469c + 07d21bb
commit b9aa274
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/alphadia/libtransform.py b/alphadia/libtransform.py
@@ -131,6 +131,10 @@ def forward(self, input_path: str) -> SpecLibBase:
         else:
             raise ValueError(f"File type {file_type} not supported")
 
+        # TODO: this is a hack to get the charged_frag_types from the fragment_mz_df
+        # this should be fixed ASAP in alphabase
+        library.charged_frag_types = library.fragment_mz_df.columns.tolist()
+
         return library