fix merge conflicts

MannLabs · Sep 20, 2024 · 1dcfd53 · 1dcfd53
1 parent f53ec19
commit 1dcfd53
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Showing 2 changed files with 2 additions and 8 deletions.
diff --git a/alphastats/plots/VolcanoPlot.py b/alphastats/plots/VolcanoPlot.py
@@ -208,10 +208,7 @@ def _sam(self):  # TODO duplicated?
 
         transposed = self.mat.transpose()
 
-        if (
-            self.dataset.preprocessing_info[PreprocessingStateKeys.LOG2_TRANSFORMED]
-            is None
-        ):
+        if self.preprocessing_info[PreprocessingStateKeys.LOG2_TRANSFORMED] is None:
             # needs to be lpog2 transformed for fold change calculations
             transposed = transposed.transform(lambda x: np.log2(x))
 

diff --git a/alphastats/statistics/DifferentialExpressionAnalysis.py b/alphastats/statistics/DifferentialExpressionAnalysis.py
@@ -109,10 +109,7 @@ def _sam(self) -> pd.DataFrame:  # TODO duplicated?
 
         transposed = self.mat.transpose()
 
-        if (
-            self.dataset.preprocessing_info[PreprocessingStateKeys.LOG2_TRANSFORMED]
-            is None
-        ):
+        if self.preprocessing_info[PreprocessingStateKeys.LOG2_TRANSFORMED] is None:
             # needs to be lpog2 transformed for fold change calculations
             transposed = transposed.transform(lambda x: np.log2(x))