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Decouple dataset from statistics #329

Merged
merged 19 commits into from
Sep 20, 2024
Merged

Decouple dataset from statistics #329

merged 19 commits into from
Sep 20, 2024

Commits on Sep 17, 2024

  1. comment out unused multicova

    @mschwoer
    mschwoer committed Sep 17, 2024
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  2. move methods used by volcano only to volcano

    @mschwoer
    mschwoer committed Sep 17, 2024
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  3. move shared tukey_test to a new module

    @mschwoer
    mschwoer committed Sep 17, 2024
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  4. make Anova a self-consistent class

    @mschwoer
    mschwoer committed Sep 17, 2024
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  5. make DifferentialExpressionAnalysis a self-consistent class

    @mschwoer
    mschwoer committed Sep 17, 2024
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  6. make Statistics a self-consistent class

    @mschwoer
    mschwoer committed Sep 17, 2024
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  7. add methods formerly provided by Statistics to DataSet

    @mschwoer
    mschwoer committed Sep 17, 2024
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  8. some leftovers

    @mschwoer
    mschwoer committed Sep 17, 2024
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  9. simplify and add some TODOs on code duplications

    @mschwoer
    mschwoer committed Sep 17, 2024
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  10. fix tests

    @mschwoer
    mschwoer committed Sep 17, 2024
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  11. fix the app

    @mschwoer
    mschwoer committed Sep 17, 2024
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  12. docstrings

    @mschwoer
    mschwoer committed Sep 17, 2024
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  13. some more comments

    @mschwoer
    mschwoer committed Sep 17, 2024
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Commits on Sep 18, 2024

  1. fix tests

    @mschwoer
    mschwoer committed Sep 18, 2024
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Commits on Sep 20, 2024

  1. Merge branch 'development' into decouple-dataset-from-statistics 

    # Conflicts:
#	alphastats/DataSet_Statistics.py
#	alphastats/gui/utils/overview_helper.py
#	alphastats/statistics/DifferentialExpressionAnalysis.py
#	tests/test_DataSet.py
    @mschwoer
    mschwoer committed Sep 20, 2024
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  2. fix log addition issue in duplicated code

    @mschwoer
    mschwoer committed Sep 20, 2024
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  3. formatting

    @mschwoer
    mschwoer committed Sep 20, 2024
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  4. disable notebook tests

    @mschwoer
    mschwoer committed Sep 20, 2024
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  5. make log2_transform = False default

    @mschwoer
    mschwoer committed Sep 20, 2024
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