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Demo for HUPO-PSI @vbrennsteiner
Summary: Here, we demonstrate the scalability of our pipeline by loading MS proteomics data on various feature levels (precursor > proteins > genes) from a DIANN-tsv PSM report of 2000 plasma samples into memory, leveraging alphapepttools. Further investigation by @vbrennsteiner shows that I/O times show significant speed ups when storing the data in serialized h5ad files compared to .tsv.