Merge pull request #14 from MannLabs/development

Development
MannLabs · Sep 9, 2023 · 6e1c8ee · 6e1c8ee
2 parents 84c3bd9 + fc7cfb1
commit 6e1c8ee
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diff --git a/alpharaw/match/psm_match.py b/alpharaw/match/psm_match.py
@@ -566,6 +566,12 @@ class PepSpecMatch_DIA(PepSpecMatch):
     min_frag_mz: float = 200.0
     rt_query_window: float = 20.0/60.0 # 20 seconds
 
+    def _add_missing_columns_to_psm_df(self,
+        psm_df:pd.DataFrame, raw_data=None
+    ):
+        # DIA results do not have spec_idx in psm_df, nothing to merge
+        return psm_df
+
     def _prepare_matching_dfs(self):
 
         fragment_mz_df = self.get_fragment_mz_df()

diff --git a/requirements.txt b/requirements.txt
@@ -7,4 +7,4 @@ pandas
 numpy
 sqlalchemy
 
-alphabase
+alphabase>=1.1.0